From: Worldwide population differentiation at disease-associated SNPs
 |  |  |  |  |  |  |  |  | Risk allele frequency | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SNP1 | Disease2 | Replication | Chr | Position3 | Gene4 | Global Fst | P | P cor | Global | Africa | Middle East | Europe | Central South Asia | East Asia | America | Oceania |
rs10077785 | CD | [30] | 5 | 131829057 | Â | 0.062 | 0.642 | 0.511 | 0.82 | 0.975 | 0.809 | 0.812 | 0.716 | 0.898 | 0.688 | 0.75 |
rs10210302 | CD | [30] | 2 | 233940839 | ATG16L1 | 0.117 | 0.315 | 0.323 | 0.393 | 0.268 | 0.459 | 0.539 | 0.541 | 0.31 | 0.066 | 0.018 |
rs10761659 | CD | [30] | 10 | 64115570 | Â | 0.251 | 0.036 | 0.046 | 0.542 | 0.015 | 0.427 | 0.507 | 0.631 | 0.759 | 0.811 | 0.269 |
rs10811661 | T2D | [27] | 9 | 22124094 | CDKN2A/2B | 0.126 | 0.278 | 0.224 | 0.782 | 0.97 | 0.805 | 0.833 | 0.876 | 0.584 | 0.836 | 0.518 |
rs10883365 | CD | [29] | 10 | 101277754 | Â | 0.04 | 0.8 | 0.65 | 0.459 | 0.48 | 0.541 | 0.497 | 0.43 | 0.449 | 0.161 | 0.643 |
rs10946398 | T2D | [27, 31] | 6 | 20769013 | CDKAL1 | 0.028 | 0.901 | 0.697 | 0.328 | 0.47 | 0.338 | 0.286 | 0.243 | 0.382 | 0.242 | 0.321 |
rs1111875 | T2D | [27, 28] | 1 | 218111919 | Â | 0.179 | 0.131 | 0.183 | 0.525 | 0.828 | 0.664 | 0.588 | 0.487 | 0.232 | 0.685 | 0.554 |
rs11171739 | T1D | [32] | 12 | 54756892 | Â | 0.221 | 0.063 | 0.049 | 0.367 | 0.884 | 0.343 | 0.438 | 0.318 | 0.219 | 0.056 | 0.481 |
rs11805303 | CD | [33] | 1 | 67387537 | IL23 | 0.085 | 0.483 | 0.492 | 0.421 | 0.27 | 0.456 | 0.303 | 0.513 | 0.547 | 0.121 | 0.446 |
rs12708716 | T1D | [32] | 16 | 11087374 | KIAA0350 | 0.071 | 0.57 | 0.398 | 0.648 | 0.411 | 0.592 | 0.611 | 0.645 | 0.773 | 0.849 | 0.571 |
rs13266634 | T2D | [27, 28] | 8 | 114748339 | SLC30A8 | 0.07 | 0.575 | 0.365 | 0.74 | 0.941 | 0.803 | 0.721 | 0.756 | 0.593 | 0.703 | 0.911 |
rs1333049 | CAD | [34, 35, 36] | 9 | 22115503 | Â | 0.079 | 0.516 | 0.464 | 0.483 | 0.157 | 0.54 | 0.569 | 0.536 | 0.52 | 0.5 | 0.161 |
rs17234657 | CD | [37] | 5 | 40437266 | Â | 0.112 | 0.334 | 0.192 | 0.07 | 0.243 | 0.099 | 0.126 | 0.021 | 0.002 | 0.008 | 0 |
rs17696736 | T1D | [32] | 12 | 110949538 | C12orf30 | 0.237 | 0.049 | 0.113 | 0.165 | 0 | 0.37 | 0.413 | 0.13 | 0.011 | 0.04 | 0 |
rs1801282 | T2D | [27, 38, 39] | 3 | 12368125 | PPARG | 0.021 | 0.943 | 0.581 | 0.923 | 1 | 0.938 | 0.91 | 0.877 | 0.923 | 0.897 | 1 |
rs2542151 | T1D/CD | [29] | 18 | 12769947 | Â | 0.008 | 0.991 | 0.77 | 0.153 | 0.183 | 0.127 | 0.144 | 0.179 | 0.154 | 0.172 | 0.018 |
rs4402960 | T2D | [27] | 3 | 186994389 | IGF2BP2 | 0.077 | 0.53 | 0.612 | 0.371 | 0.693 | 0.302 | 0.354 | 0.378 | 0.306 | 0.218 | 0.536 |
rs5215 | T2D | [27, 38, 39] | 11 | 17365206 | KCNJ11 | 0.057 | 0.671 | 0.697 | 0.319 | 0.056 | 0.268 | 0.418 | 0.34 | 0.377 | 0.312 | 0.393 |
rs564398 | T2D | [27] | 9 | 22019547 | CDKN2A/2B | 0.113 | 0.332 | 0.246 | 0.818 | 1 | 0.848 | 0.706 | 0.753 | 0.862 | 0.937 | 0.34 |
rs6679677 | T1D/RA | [40, 41] | 1 | 114015850 | RSBN1 | 0.019 | 0.95 | 0.875 | 0.016 | 0 | 0.019 | 0.055 | 0.013 | 0.004 | 0 | 0 |
rs6887695 | CD | [29] | 5 | 158755223 | Â | 0.028 | 0.898 | 0.741 | 0.362 | 0.381 | 0.383 | 0.281 | 0.299 | 0.409 | 0.371 | 0.643 |
rs7901695 | T2D | [27, 28, 31] | 10 | 114744078 | TCF7L2 | 0.213 | 0.073 | 0.08 | 0.281 | 0.629 | 0.438 | 0.325 | 0.321 | 0.044 | 0.087 | 0.054 |
rs9858542 | CD | [29] | 3 | 49676987 | BSN | 0.094 | 0.432 | 0.318 | 0.222 | 0.23 | 0.301 | 0.317 | 0.331 | 0.077 | 0.016 | 0.143 |
rs9939609 | T2D/OB | [27, 42] | 16 | 52378028 | FTO | 0.101 | 0.391 | 0.446 | 0.315 | 0.471 | 0.41 | 0.426 | 0.348 | 0.157 | 0.048 | 0.25 |