Table 1 List of genes whose ratios are at least two-fold higher in ovarian serous adenocarcinoma compared to normal ovary.
ProbeName | GeneName | Annotation | FF tumor/FF normal ratio | FFPE tumor/FF normal ratio |
|---|---|---|---|---|
A_23_P91081 | TACSTD1 | tumor-associated calcium signal transducer 1 (TACSTD1), mRNA [NM_002354] | 43.7 | 5.1 |
A_23_P118894 | ATAD4 | ATPase family, AAA domain containing 4 (ATAD4), mRNA [NM_024320] | 25.1 | 20.4 |
A_23_P71017 | CLDN3 | claudin 3 (CLDN3), mRNA [NM_001306] | 20.4 | 77.2 |
A_23_P124335 | THC2539702 | Q9F8M7_CARHY (Q9F8M7) DTDP-glucose 4,6-dehydratase (Fragment), [THC2546981] | 20.0 | 22.2 |
A_24_P411186 | BCL11A | B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 1, mRNA [NM_022893] | 18.7 | 14.8 |
A_24_P273647 | LOC146439 | mRNA; cDNA DKFZp666L166 (from clone DKFZp666L166). [AL833749] | 17.5 | 95.5 |
A_23_P393051 | C1orf172 | chromosome 1 open reading frame 172 (C1orf172), mRNA [NM_152365] | 16.9 | 18.0 |
A_24_P153713 | MARVELD3 | MARVEL domain containing 3 (MARVELD3), transcript variant 1, mRNA [NM_001017967] | 14.4 | 34.7 |
A_24_P57977 | SNIP | SNAP25-interacting protein (SNIP), mRNA [NM_025248] | 12.6 | 32.1 |
A_23_P83339 | RNF183 | ring finger protein 183 (RNF183), mRNA [NM_145051] | 11.1 | 36.2 |
A_23_P50096 | TYMS | thymidylate synthetase (TYMS), mRNA [NM_001071] | 11.1 | 3.0 |
A_23_P33511 | AX721087 | Incyte sequence 47 from Patent WO0220754. [AX721087] | 11.0 | 23.4 |
A_23_P163481 | BUB1B | BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) (BUB1B), mRNA [NM_001211] | 10.2 | 4.3 |
A_32_P57013 | BU540282 | AGENCOURT_10326456 NIH_MGC_141 cDNA clone IMAGE:6571686 5', mRNA [BU540282] | 10.0 | 105.4 |
A_23_P319859 | EYA2 | eyes absent homolog 2 (Drosophila) (EYA2), transcript variant 2, mRNA [NM_172113] | 9.9 | 4.2 |
A_32_P183765 | ERBB4 | v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) (ERBB4), mRNA [NM_005235] | 9.6 | 8.6 |
A_23_P385861 | CDCA2 | cell division cycle associated 2 (CDCA2), mRNA [NM_152562] | 9.4 | 6.8 |
A_32_P46456 | THC2648851 | glucosidase, beta (bile acid) 2 (GBA2), mRNA [NM_020944] | 9.4 | 22.0 |
A_32_P30874 | AJ420543 | mRNA full length insert cDNA clone EUROIMAGE 1090207. [AJ420543] | 9.3 | 30.6 |
A_24_P402588 | BCL11A | B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 1, mRNA [NM_022893] | 9.2 | 31.1 |
A_23_P210001 | PAX8 | paired box gene 8 (PAX8), transcript variant PAX8A, mRNA [NM_003466] | 8.4 | 31.3 |
A_32_P136033 | AK090477 | mRNA for FLJ00399 protein. [AK090477] | 8.4 | 12.8 |
A_23_P166508 | BC038245 | clone IMAGE:5241654, mRNA. [BC038245] | 7.9 | 9.1 |
A_23_P18579 | PTTG2 | pituitary tumor-transforming 2 (PTTG2), mRNA [NM_006607] | 7.5 | 7.8 |
A_23_P78958 | CAPS | calcyphosine (CAPS), transcript variant 1, mRNA [NM_004058] | 7.2 | 11.1 |
A_23_P72411 | CYP4X1 | cytochrome P450, family 4, subfamily X, polypeptide 1 (CYP4X1), mRNA [NM_178033] | 7.2 | 4.0 |
A_32_P151244 | AK022268 | cDNA FLJ12206 fis, clone MAMMA1000941. [AK022268] | 7.0 | 22.2 |
A_23_P10385 1 | DTL | denticleless homolog (Drosophila) (DTL), mRNA [NM_016448] | 6.5 | 5.4 |
A_23_P68669 | CHODL | chondrolectin (CHODL), mRNA [NM_024944] | 6.4 | 9.6 |
A_32_P148745 | FLJ14712 | cDNA FLJ14712 fis, clone NT2RP3000825. [AK027618] | 6.1 | 3.3 |
A_23_P151915 | GCNT3 | glucosaminyl (N-acetyl) transferase 3, mucin type. Acc:NP_004742] [ENST00000267857] | 5.9 | 11.9 |
A_32_P77933 | FLJ22795 | colon cancer-associated antigen AgSK1-2HT-ECS mRNA, complete cds. [AF316855] | 5.9 | 24.1 |
A_23_P31073 | MYB | v-myb myeloblastosis viral oncogene homolog (avian) (MYB), mRNA [NM_005375] | 5.5 | 24.8 |
A_23_P28953 | DNMT3B | DNA (cytosine-5-)-methyltransferase 3 beta (DNMT3B), transcript variant 6, mRNA [NM_175850] | 5.3 | 8.9 |
A_32_P117186 | CR749547 | mRNA; cDNA DKFZp686J17110 (from clone DKFZp686J17110) [CR749547] | 5.0 | 4.1 |
A_32_P128558 | FLJ22795 | colon cancer-associated antigen AgSK1-2HT-ECS mRNA, complete cds. [AF316855] | 4.8 | 15.7 |
A_23_P166360 | PRAME | preferentially expressed antigen in melanoma (PRAME), transcript variant 5, mRNA [NM_206956] | 4.5 | 3.1 |
A_23_P103720 | AGMAT | agmatine ureohydrolase (agmatinase) (AGMAT), mRNA [NM_024758] | 4.3 | 2.8 |
A_23_P42935 | BRAF | v-raf murine sarcoma viral oncogene homolog B1 (BRAF), mRNA [NM_004333] | 4.2 | 3.6 |
A_24_P741023 | BC008476 | cDNA clone IMAGE:4290767. [BC008476] | 3.9 | 18.5 |
A_23_P49972 | CDC6 | cell division cycle 6 homolog (S. cerevisiae) (CDC6), mRNA [NM_001254] | 3.9 | 4.7 |
A_24_P925191 | THC2640472 | Q2M1U4_HUMAN (Q2M1U4) Catalase, partial (31%) [THC2640472] | 3.9 | 6.5 |
A_24_P145316 | DTNBP1 | dystrobrevin binding protein 1 (DTNBP1), transcript variant 2, mRNA [NM_183040] | 3.8 | 5.9 |
A_23_P19987 | IGF2BP3 | insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3), mRNA [NM_006547] | 3.7 | 13.6 |
A_23_P1487681 | F5 | coagulation factor V (proaccelerin, labile factor) (F5), mRNA [NM_000130] | 3.6 | 78.1 |
A_23_P37704 | CDT1 | chromatin licensing and DNA replication factor 1 (CDT1), mRNA [NM_030928] | 3.5 | 7.5 |
A_24_P544543 | CAPN1 | cDNA FLJ12257 fis, clone MAMMA1001501, highly similar to CALPAIN 1. [AK022319] | 3.1 | 8.2 |
A_23_P89570 | ZMYND15 | zinc finger, MYND-type containing 15 (ZMYND15), mRNA [NM_032265] | 2.9 | 11.8 |
A_24_P340659 | AF268613 | POU 5 domain protein (POU5FLC1) mRNA, complete cds. [AF268613] | 2.8 | 3.1 |
A_24_P343095 | DHFR | dihydrofolate reductase (DHFR), mRNA [NM_000791] | 2.8 | 2.6 |
A_24_P257099 | DKFZp762E1312 | hypothetical protein DKFZp762E1312 (DKFZp762E1312), mRNA [NM_018410] | 2.7 | 2.9 |
A_23_P110957 | FOXF2 | forkhead box F2 (FOXF2), mRNA [NM_001452] | 2.7 | 3.9 |
A_23_P75260 | RASSF4 | Ras association (RalGDS/AF-6) domain family 4 (RASSF4), mRNA [NM_032023] | 2.6 | 7.4 |
A_32_P81173 | USP34 | mRNA; cDNA DKFZp586J101 (from clone DKFZp586J101). [AL050376] | 2.6 | 2.9 |
A_23_P156807 | SDHAP3 | succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3 (SDHAP3) [NR_003263] | 2.6 | 9.5 |
A_23_P109072 | SALL4 | sal-like 4 (Drosophila) (SALL4), mRNA [NM_020436] | 2.6 | 3.5 |
A_32_P132563 | POU5F1 | POU domain, class 5, transcription factor 1 (POU5F1), transcript variant 1, mRNA [NM_002701] | 2.5 | 10.8 |
A_23_P24870 1 | CD44 | CD44 molecule (Indian blood group) (CD44), transcript variant 1, mRNA [NM_000610] | 2.5 | 5.2 |