An assessment of the portability of ancestry informative markers between human populations

BMC Medical Genomics

Table 1 Fst values of the 10 BritAIMs and the associated P values.

	Global		Europe		Middle East		Africa		Central South Asia		East Asia		Oceania		America
BritAIMs	Fst	P	Fst	P	Fst	P	Fst	P	Fst	P	Fst	P	Fst	P	Fst	P
rs7696175	0.074	0.551	0.129	0.000	0.002	0.840	0.052	0.469	0.011	0.748	0.018	0.802	0.067	0.439	0.118	0.333
rs1460133	0.035	0.842	0.062	0.043	0.027	0.286	0	1	0.022	0.502	0.010	0.916	NA	NA	0.042	0.695
rs9378805	0.115	0.321	0.030	0.280	0.043	0.136	0.019	0.796	0.020	0.554	0.016	0.831	0.072	0.424	0.027	0.754
rs11790408	0.067	0.594	0.043	0.141	0.088	0.022	0.028	0.714	0.046	0.169	0.009	0.920	0.015	0.709	0.108	0.370
rs12295525	0.068	0.591	0.034	0.226	0.008	0.666	0.047	0.513	0.024	0.454	0.017	0.809	NA	NA	0.021	0.820
rs12797951	0.106	0.365	0	1	0.105	0.015	0.037	0.611	0.053	0.116	0.061	0.136	NA	NA	0.175	0.167
rs10774241	0.103	0.383	0	1	0	1	0.090	0.226	0.024	0.470	0.029	0.580	0.004	0.760	0.139	0.247
rs17449560	0.036	0.835	0.017	0.520	0.043	0.135	0.112	0.146	0.003	0.909	0.017	0.814	0.199	0.210	0.061	0.581
rs3760843	0.033	0.855	0.024	0.369	0	1	0.073	0.320	0.014	0.665	0.021	0.747	0.144	0.295	0.139	0.247
rs2143877	0.078	0.529	0.046	0.117	0.011	0.585	0.053	0.460	0.004	0.892	0.015	0.857	0.005	0.754	0.038	0.714

Global Fst was calculated among the 7 continental regions listed as column titles. P values were generated by comparison to an empirical distribution of 2750 markers (see Methods). Significant P values (P < 0.05) are in bold.

ISSN: 1755-8794