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Table 1 Comparison of genes identified by SAM with oncogenic pathway signatures*

From: Anti-oncogenic and pro-differentiation effects of clorgyline, a monoamine oxidase A inhibitor, on high grade prostate cancer cells

Oncogenic pathway

Number of unique genes down

Number of genes overlap with SAM

Expected number of genes overlap with SAM

P-value

beta-catenin

1839

36

12

1.8E-12

Src

1944

37

13

3.7E-12

ERBB2

1350

26

9

3.8E-9

Ras

2224

35

14

4.1E-8

E2F3

1820

24

12

3.1E-4

MEK

1168

16

8

1.9E-3

Myc

1334

16

9

1.1E-2

  1. *The named oncogenic pathway genes used for comparison were compiled by Creighton [19].