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Table 4 qPCR Primer Sequences

From: DNA microarray profiling of genes differentially regulated by the histone deacetylase inhibitors vorinostat and LBH589 in colon cancer cell lines

Gene

   

Name

Accession #

Strand

Primer Sequence

Size (bp)

18s rRNA

NR_003286.1

F

CGCCGCTAGAGGTGAAATTC

62

  

R

TTGGCAAATGCTTTCGCTC

 

ARRDC4

NM_183376.2

F

CCGGCCGGTGAAGGCATCAT

140

  

R

TCCAACACTGCCCGCACACA

 

AURKB

NM_004217.2

F

GACCTAAAGTTCCCCGCTTC

165

  

R

GACAGATTGAAGGGCAGAGG

 

AVEN

NM_020371.2

F

TGCTCACAGCAGTAAATGCC

155

  

R

TGCAAGGAAGGAGGCTAGAA

 

CDCA7

NM_031942.4

F

CATGGAAACCTCGTCATCCT

95

  

R

TACAGCCTTCCCGAACTGAC

 

DHRS2

NM_182908.4

F

GTCCTTCCTGTGCTCTCCAG

169

  

R

AGACTCTGCCTCCAGATCCA

 

GAPDH

NM_002046.3

F

ATGGGGAAGGTGAAGGTCG

107

  

R

GGGTCATTGATGGCAACAATATC

 

HIST1H1C

NM_005319.3

F

ACACCGAAGAAAGCGAAGAA

116

  

R

AGCCTTAGCAGCACTTTTGG

 

HIST1H2BD

NM_138729.1

F

AAGGCCGTCACCAAGTACAC

136

  

R

TTTCAGGCAGATGAGACTTCC

 

IRAK1

NM_0001569.3

F

GCTGGCCCTGTACGAGGAT

129

  

R

ACACATCAGCTCTGAAATTCATCAC

 

MT1G

NM_005950.1

F

CCCCAACTGCTCCTGTGCCG

202

  

R

GGGAGCAGGGCTGTCCCGA

 

MT1X

NM_005952.3

F

GCAAATGCAAAGAGTGCAAA

146

  

R

ACAGCTGTCCTGGCATCAG

 

NFKB1

NM_003998.2

F

CACGAATGACAGAGGCGTGTA

130

  

R

TGGCGGATTAGCTCTTTTTCC

 

RGL1

NM_015149.3

F

GCCGTCCCAAGGGACCGAATG

166

  

R

GCCGCCTCTGGGTACGCTTC

 

THBS1

NM_003246.2

F

CACGCTGCAGGACAGCAT

69

  

R

GGCCGCCTCAGCTCATT

 

TYMS

NM_001071.2

F

GGAGGAGTTGCTGTGGTTTATCAAG

108

  

R

AGGCTGTCCAAAAAGTCTCGGG

 

UNG

NM_003362.2

F

TTATGGTGAAACAGGGGAGA

176

  

R

AGTGGAACTGGCAGAGACTG

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