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Table 2 Allele and genotype frequencies of the 964 participants.

From: Genotypes and haplotypes in the insulin-like growth factors, their receptors and binding proteins in relation to plasma metabolic levels and mammographic density

Gene

 

Gene ID

SNP ID

Allele 1 frequency

Allele 2 frequency

A1/A1 N = (%)

A1/A2 N = (%)

A2/A2 N = (%)

IGF1

1

IGF1-02

rs6220

T = 0.66703

C = 0.33297

C/C = 104 (11.2)

T/C = 410 (44.2)

T/T = 414 (44.6)

 

2

IGF1-04

rs2162679

G = 0.16772

A = 0.83228

G/G = 22 (2.3)

G/A = 275 (28.9)

A/A = 654 (68.8)

IGF2

1

IGF2-02

rs734351

T = 0.62393

C = 0.37607

C/C = 129 (13.8)

T/C = 443 (47.5)

T/T = 360 (38.6)

 

2

IGF2-03

rs3213216

G = 0.61645

A = 0.38355

A/A = 131 (14.0)

G/A = 456 (48.7)

G/G = 349 (37.3)

IGF1R

1

IGF1R-05

rs2137680

G = 0.70768

A = 0.29232

A/A = 92 (9.7)

G/A = 372 (39.1)

G/G = 487 (51.2)

 

2

IGF1R-18

rs2175795

G = 0.70952

A = 0.29048

A/A = 90 (9.5)

G/A = 369 (39.0)

G/G = 486 (51.4)

 

3

IGF1R-06

rs907806

G = 0.09201

A = 0.90799

G/G = 15 (1.6)

G/A = 145 (15.2)

A/A = 791 (83.2)

 

4

IGF1R-04

rs3743258

G = 0.72569

A = 0.27431

A/A = 71 (7.5)

G/A = 377 (39.9)

G/G = 498 (52.6)

 

5

IGF1R-26

rs3743259

G = 0.30765

A = 0.69235

G/G = 86 (9.1)

G/A = 407 (43.3)

A/A = 448 (47.6)

 

6

IGF1R-03

rs2272037

C = 0.57354

T = 0.42646

T/T = 171 (18.1)

C/T = 464 (49.1)

C/C = 310 (32.8)

 

7

IGF1R-01

rs2229765

G = 0.56019

A = 0.43981

A/A = 184 (19.4)

G/A = 465 (49.1)

G/G = 298 (31.5)

 

8

IGF1R-07

rs2016347

T = 0.52784

G = 0.47216

G/G = 202 (21.2)

T/G = 495 (52.0)

T/T = 255 (26.8)

IGF2R

1

IGF2R-05

rs1570070

A = 0.63097

G = 0.36903

G/G = 132 (14.0)

A/G = 432 (45.8)

A/A = 379 (40.2)

 

2

IGF2R-01

rs894817

G = 0.68873

A = 0.31127

A/A = 97 (10.6)

G/A = 375 (41.0)

G/G = 442 (48.4)

 

3

IGF2R-02

rs998075

G = 0.49840

A = 0.50160

G/G = 235 (25)

G/A = 467 (49.7)

A/A = 238 (25.3)

 

4

IGF2R-11

rs998074

C = 0.50211

T = 0.49789

T/T = 235 (24.8)

C/T = 474 (50)

C/C = 239 (25.2)

 

5

IGF2R-04

rs629849

G = 0.86456

A = 0.13544

A/A = 21 (2.2)

G/A = 211 (22.6)

G/G = 702 (75.2)

 

6

IGF2R-07

rs2282140

C = 0.89504

T = 0.10496

T/T = 6 (0.6)

C/T = 187 (19.7)

C/C = 755 (79.6)

 

7

IGF2R-03

rs1803989

T = 0.09746

C = 0.90254

T/T = 10 (1.1)

T/C = 164 (17.4)

C/C = 770 (81.6)

IGFALS

1

IGFALS-05

rs9282731

T = 0.00105

C = 0.99895

T/T = 0 (0)

T/C = 2 (0.2)

C/C = 946 (99.8)

 

2

IGFALS-01

rs17559

T = 0.09057

C = 0.90943

T/T = 13 (1.4)

T/C = 145 (15.4)

C/C = 786 (83.3)

 

3

IGFALS-02

rs3751893

T = 0.21186

C = 0.78814

T/T = 41 (4.3)

T/C = 318 (33.7)

C/C = 585 (62.0)

IGFBP3

1

IGFBP3-05

rs9282734

C = 0.00317

A = 0.99683

C/C = 0 (0)

C/A = 6 (0.6)

A/A = 941 (99.4)

 

2

IGFBP3-04

rs2471551

G = 0.17766

C = 0.82234

G/G = 27 (2.9)

G/C = 280 (29.8)

C/C = 633 (67.3)

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BMC Medical Genomics

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