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Table 3 Correlation of expression levels of sno/scaRNAs resulting from multiclass or supervised analyses and corresponding host-genes

From: Small nucleolar RNAs as new biomarkers in chronic lymphocytic leukemia

Sno/scaRNA

Alias

Cytoband

Host gene

Kendall q-value

Target RNA

SNORD45B

U45B

1p31.1

RABGGTB

7.260E-14

18S rRNA A159 and 18S rRNA U172

SNORD38A

U38A

1p34

RPS8

Aa

28S rRNA A1858

SNORD38B

U38B

1p34

RPS8

Aa

28S rRNA A1858

SNORA16A

ACA16

1p35.3

SNHG12

2.540E-02

28S rRNA U4412

SNORD76

U76

1q25

GAS5

Aa

28S rRNA A2350

SNORD94

U94

2p11.2

PTCD3

5.609E-01

U6 snRNA C62

SNORA70F

U70F

2q24

COBLL1

<2.2e-16

18S rRNA U1692

SNORA6

ACA6

3p22

RPSA

4.180E-06

28S rRNA U3616

SNORA62

E2

3p22

RPSA

6.380E-06

28S rRNA U3830 and 28S rRNA U3832

SCARNA7

U90

3q25

KPNA4

8.912E-01

U1 snRNA A70

SNORA24

ACA24

4q26

SNHG8

Aa

18S rRNA U863 and 18S rRNA U609

SNORD50A

U50

6q14

SNHG5

Aa

28S rRNA C2848 and 28S rRNA G2863

SNORA20

ACA20

6q25

TCP1

1.000E+00

18S rRNA U651

SNORD54

U54

8q12.1

RPS20

<2.2e-16

18S rRNA G644

SNORA70C

U70C

9q33.1

ASTN2

3.760E-06

18S rRNA U1692

SNORD15B

U15B

11q13.4

RPS3

<2.2e-16

28S rRNA A3764

SCARNA9

mgU2-19/30

11q21

KIAA1731

1.050E-01

U2 snRNA G19 and U2 snRNA A30

SCARNA10

U85

12p13

NCAPD2

3.746E-01

U5 snRNA U46 and U5 snRNA C45

SNORA2B

ACA2B

12q13.11

C12orf41

<2.2e-16

28S rRNA U4263 and 28S rRNA U4282

SNORD59B

U59B

12q13.3

ATP5B

3.530E-07

18S rRNA A1031

SNORD59A

U59

12q13.3

ATP5B

9.032E-04

18S rRNA A1031

SNORA70G

U70G

12q15

RAB1B

1.000E+00

18S rRNA U1692

SNORA31

ACA31

13q14.13

TPT1

2.951E-02

18S rRNA U218 and 28S rRNA U3713

SNORD8

mgU6-53

14q11

CHD8

6.937E-01

U6 snRNA A53

SNORD116-23

HBII-85-23

15q11.2

SNRPN

3.017E-02

unknown

SNORD116-1

HBII-85-1

15q11.2

SNRPN

1.364E-01

unknown

SNORD116-29

HBII-85-29

15q11.2

SNRPN

8.127E-01

unknown

SNORD60

U60

16p13

LOC100507303

Aa

28S rRNA G4340

SNORD104

U104

17q23

ORGUL028719

Aa

28S rRNA C1327

SCARNA17

mgU12-22/U4-8

18q21.1

Ib

 

U4 snRNA C8 and U12 snRNA G22

SNORA68

U68

19p13

RPL18A

Aa

28S rRNA U4393

SNORD37

U37

19p13.3

EEF2

1.845E-03

28S rRNA A3697

SNORD34

U34

19q13

RPL13A

Aa

28S rRNA U2824

SNORA71C

U71C

20q11.23

LOC388796

1.910E-01

18S rRNA U406

SNORA36A

ACA36

Xq28

DKC1

1.561E-03

18S rRNA U1244 and 18S rRNA U105

  1. Abbreviations: scaRNA small Cajal body-specific RNA, snoRNA small nucleolar RNA. aprobe not present onto Human Gene 1.0 ST arrays; bIndependent transcriptional unit; snoRNA significantly correlating with corresponding host gene is typed in bold.