Table 11 The performances of various protein complex detection algorithms on PPI datasets using the SGD gold standard

C

O

A

C

H

Accuracy

0.4930

0.5042

0.4515

0.4519

0.4750

Accuracy(-0.6)

0.4937

0.5085

0.4804

0.4852

0.4766

Δ(-0.6)

0.14%

0.85%

6.40%

7.37%

0.34%

3.02%

Accuracy(0)

0.4779

Δ(0)

0.61%

MMR

0.2747

0.2614

0.2466

0.2538

0.3000

MMR(-0.6)

0.3056

0.2804

0.3000

0.3076

0.3020

Δ(-0.6)

11.25%

7.27%

21.65%

21.20%

0.67%

12.41%

MMR(0)

0.2993

Δ(0)

-0.23%

C

M

C

Accuracy

0.4635

0.4518

0.4179

0.4393

0.3203

Accuracy(-0.6)

0.4819

0.4587

0.4579

0.4746

0.3159

Δ(-0.6)

3.97%

1.53%

9.57%

8.04%

-1.37%

4.35%

Accuracy(0)

0.3283

Δ(0)

2.50%

MMR

0.2006

0.2378

0.1552

0.1724

0.0583

MMR(-0.6)

0.2273

0.2545

0.2135

0.2262

0.0518

Δ(-0.6)

13.31%

7.02%

37.56%

31.21%

-11.15%

15.59%

MMR(0)

0.0629

Δ(0)

7.89%

R

R

W

Accuracy

0.5022

0.498

0.4676

0.469

0.5188

Accuracy(-0.6)

0.5098

0.5009

0.4855

0.4893

0.5062

Δ(-0.6)

1.51%

0.58%

3.83%

4.33%

-2.43%

1.56%

Accuracy(0)

0.528

Δ(0)

1.77%

MMR

0.2763

0.2636

0.2414

0.2476

0.2681

MMR(-0.6)

0.2901

0.2698

0.2771

0.2773

0.2550

Δ(-0.6)

4.99%

2.35%

14.79%

12.00%

-4.89%

5.85%

MMR(0)

0.2822

Δ(0)

5.26%