| RPKM | MART | PDEGEM |
---|
R
2
|
−
1
| 0.30 |
0.54
|
SRCC2 | 0.8341 | 0.8501 |
0.8655
|
- Spearman's rank correlation coefficient of RPKM, MART, PDEGEM with the true transcript abundance measured by transcript concentration in the experiment [25]. We compared four different methods using a synthetic RNA-Seq dataset with 90 isoforms. The number in bold indicates the highest R2 among three methods for the dataset.
- 1RPKM has no R2.
- 2 Spearman's rank correlation coefficient.