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Table 3 Top 20 up-regulated and down-regulated mRNAs in PCOS compared with control

From: Expression profile analysis of LncRNAs and mRNAs in pre-receptive endometrium of women with polycystic ovary syndrome undergoing in vitro fertilization-embryo transfer

mRNA

baseMean

log2FoldChange

lfcSE

stat

pvalue

padj

The top 20 up-regulated mRNAs

ANO3

157.3071602

6.648539703

2.221707526

2.992535977

0.002766701

0.02094944

ZCCHC12

122.5225693

5.784659671

0.915759628

6.316788262

2.67E-10

1.57E-07

CALCR

2421.815726

5.596638064

1.719322106

3.255142271

0.001133356

0.011796194

CADM2

40.41806472

4.723687436

1.337086642

3.532820752

0.000411151

0.006439965

AC005833.1

171.5341571

3.932053086

0.53552034

7.342490637

2.10E-13

4.01E-10

PCSK5

9402.966711

3.87014543

1.39044394

2.783388326

0.005379438

0.03224502

CST4

60.51995148

3.858555554

0.658165445

5.862592125

4.56E-09

1.70E-06

KIF1A

113.1998088

3.641537817

0.87558267

4.158987998

3.20E-05

0.001287307

DISP3

39.22201926

3.635825654

0.867074529

4.193210076

2.75E-05

0.001165887

SPDEF

1512.491113

3.606229488

1.305902049

2.761485435

0.005753908

0.033483351

MMEL1

64.13007612

3.376385323

0.500995444

6.739353354

1.59E-11

1.74E-08

KMO

2684.853597

3.283212864

0.434940609

7.548646405

4.40E-14

1.12E-10

DNAH8

140.5014962

3.216801926

0.708432865

4.540729386

5.61E-06

0.000420532

ADCYAP1R1

1656.535652

3.108806719

0.537929504

5.779208418

7.51E-09

2.50E-06

ELFN2

33.59811717

2.912199046

0.669790149

4.347927555

1.37E-05

0.000732784

TNFSF11

97.99024493

2.871329047

0.429686644

6.682379101

2.35E-11

2.40E-08

GABRQ

69.81371357

2.860582962

0.655315798

4.365197618

1.27E-05

0.000696631

FAM189A1

32.33711087

2.840343239

0.620961448

4.574105601

4.78E-06

0.000373408

MAT1A

80.78973322

2.821342751

0.639015503

4.415139753

1.01E-05

0.000612999

PRKCQ

1278.233547

2.813881386

0.386510519

7.280219416

3.33E-13

5.67E-10

The top 20 down-regulated mRNAs

PAEP

290.1337998

-6.312976975

1.318491044

-4.788031747

1.68E-06

0.000174149

STC1

1972.76416

-4.746556644

1.30464222

-3.638205611

0.000274544

0.005098726

CXCL14

400.7516327

-4.291213538

1.227244682

-3.496624267

0.000471185

0.007059697

SLC15A1

481.9399755

-4.09932095

1.307254123

-3.135825605

0.001713711

0.015336208

SIK1

436.8752207

-4.097336539

0.679866407

-6.026678918

1.67E-09

7.53E-07

S100P

31.45381157

-3.763955105

1.203275811

-3.128090061

0.001759463

0.015599685

GABRE

322.7174059

-3.544738283

0.617756874

-5.738079871

9.58E-09

3.05E-06

AOX1

340.7856146

-3.530563746

0.694030375

-5.087044996

3.64E-07

5.46E-05

KCND2

199.0849394

-3.507598611

0.810875439

-4.325693493

1.52E-05

0.000785373

RIMKLB

7607.02118

-3.502822337

0.957460025

-3.65845283

0.000253742

0.004833396

GABRA2

548.6255526

-3.432582493

0.574065464

-5.979426927

2.24E-09

9.64E-07

ATP12A

39.57450851

-3.355914733

0.923047861

-3.63568876

0.000277239

0.005123897

ATF3

334.1369043

-3.328213755

0.5971486

-5.573510103

2.50E-08

6.95E-06

THBS2

700.6283886

-3.327947103

0.637604448

-5.219454023

1.79E-07

3.13E-05

C1orf116

33.82118676

-3.315628628

0.619043237

-5.35605339

8.51E-08

1.67E-05

OR2A4

439.643488

-3.245233566

0.329932394

-9.836056174

7.87E-23

1.20E-18

NR4A1

698.0154014

-3.210500308

0.492890899

-6.513612476

7.34E-11

5.91E-08

C2CD4A

1225.298302

-3.107462632

0.388523924

-7.998124295

1.26E-15

4.83E-12

PRSS51

143.1514225

-3.084718579

0.703500999

-4.384810519

1.16E-05

0.000667562

LEFTY2

94.98716252

-3.049740569

0.769103193

-3.965320384

7.33E-05

0.002238863

  1. baseMean: mean of normalized counts for all samples, log2FoldChange: log2 fold change (MLE), lfcSE: standard error, stat: Wald statistic, pvalue: Wald test p-value, padj: BH adjusted p-values