Skip to main content

Table 1 Summary of lung cancer datasets used in this study.

From: An expression meta-analysis of predicted microRNA targets identifies a diagnostic signature for lung cancer

Database GEO Platform Institute PMID Technology type Organism AD# SCC# Stage # Genes % Correct AD % Correct SCC
1 GSE3398 GPL2648/2778/2832 Stanford 11707590 spotted cDNA Human 41 17 I to III 17 93 94
2 NA* Affy HG-U95A DFCI 11707567 oligonucleotide Human 139 21 I to III 17 91 86
3 NA** Affy HG-U133A U Michigan 12118244 oligonucleotide Human 86 0 I to III 17 95 NA
4 GSE3141 Affy U95A/HuGeneFL Duke 16899777 oligonucleotide Human 54 57 I to III 17 83 72
5 GSE4573 Affy HG-U133A U Michigan 16885343 oligonucleotide Human 0 129 I to III 17 NA 85
6 GSE1037 CHUGAI 41K CIH, Japan 15016488 spotted cDNA Human 12 0 NA 17 83 NA
7 GSE6253 Affy HG-U95A/U133AB Washington U 17194181 oligonucleotide Human 14 36 I 17 79 78
8 GSE3268 Affy HG-U133A UC Davis 16188928 oligonucleotide Human 0 5 NA 17 NA 100
9 GSE1987 Affy HG-U95A Tel Aviv U NA oligonucleotide Human 8 17 I to III 17 88 59
10 GSE6044 Affy HG-Focus U Duesseldorf, Germany NA oligonucleotide Human 10 10 NA 16 70 90
11 GSE7880 Affy HG-Focus Heinrich-Heine U, Germany NA oligonucleotide Human 25 18 IIIB/IV 16 92 83
12 GSE2514 Affy HG-U95A U Colorado 16314486 oligonucleotide Human 20 0 NA 15 100 NA
13 GSE5843 GSE5123 PC Human Operon v2 Prince Charles H, Australia 17082175 17504995 oligonucleotide Human 48 51 I to III 14 75 80
14 GSE2514 Affy MG-U74A U Colorado 16314486 oligonucleotide Mouse 44 0 NA 13 100 NA
  1. * http://www.broad.mit.edu/cgi-bin/cancer/datasets.cgi
  2. ** https://caarraydb.nci.nih.gov/caarray/publicExperimentDetailAction.do?expId=1015897558050283