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Table 2 The frequency of predicted miR-34b/34c/449 target sites within the 17 core genes

From: An expression meta-analysis of predicted microRNA targets identifies a diagnostic signature for lung cancer

Algorithm

TargetScan 4.0

MiRanda v4

PicTar

miRNA

34b (c*)

34b (pc**)

34/449 (c*)

34/449 (pc**)

34b

34c

449

34b

34c

BMP7

 

1

  

1

    

CRABP2§

   

1

 

2

1

  

CRIP2§

   

1

 

1

1

  

EFNB1

 

1

1

2

 

1

1

  

FLII

    

1

1

   

FOS§

   

1

 

1

   

JAG1§

1

 

1

1

  

1

1

1

MST1R§

    

1

    

MUC5B

     

1

2

  

NR4A2

1

1

     

2

2

NRG1

    

1

  

3

3

RELN

  

1

 

1

    

TGFBR2

 

2

 

1

1

1

   

THBS3

     

2

2

  

TLE2

 

1

    

1

  

TPM2

      

2

  

VAMP2

1

1

3

    

1

1

  1. *c: Conserved sites for miRNA families conserved in human, mouse, rat, and dog.
  2. **pc: Poorly conserved sites and sites for poorly conserved miRNA families.
  3. §Genes also reported as differentially expressed between AD and SCC in the paper that published the Database 1.
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BMC Medical Genomics

ISSN: 1755-8794

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