Skip to main content

Table 1 List of genes whose ratios are at least two-fold higher in ovarian serous adenocarcinoma compared to normal ovary.

From: Microarray analysis of RNA extracted from formalin-fixed, paraffin-embedded and matched fresh-frozen ovarian adenocarcinomas

ProbeName GeneName Annotation FF tumor/FF normal ratio FFPE tumor/FF normal ratio
A_23_P91081 TACSTD1 tumor-associated calcium signal transducer 1 (TACSTD1), mRNA [NM_002354] 43.7 5.1
A_23_P118894 ATAD4 ATPase family, AAA domain containing 4 (ATAD4), mRNA [NM_024320] 25.1 20.4
A_23_P71017 CLDN3 claudin 3 (CLDN3), mRNA [NM_001306] 20.4 77.2
A_23_P124335 THC2539702 Q9F8M7_CARHY (Q9F8M7) DTDP-glucose 4,6-dehydratase (Fragment), [THC2546981] 20.0 22.2
A_24_P411186 BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 1, mRNA [NM_022893] 18.7 14.8
A_24_P273647 LOC146439 mRNA; cDNA DKFZp666L166 (from clone DKFZp666L166). [AL833749] 17.5 95.5
A_23_P393051 C1orf172 chromosome 1 open reading frame 172 (C1orf172), mRNA [NM_152365] 16.9 18.0
A_24_P153713 MARVELD3 MARVEL domain containing 3 (MARVELD3), transcript variant 1, mRNA [NM_001017967] 14.4 34.7
A_24_P57977 SNIP SNAP25-interacting protein (SNIP), mRNA [NM_025248] 12.6 32.1
A_23_P83339 RNF183 ring finger protein 183 (RNF183), mRNA [NM_145051] 11.1 36.2
A_23_P50096 TYMS thymidylate synthetase (TYMS), mRNA [NM_001071] 11.1 3.0
A_23_P33511 AX721087 Incyte sequence 47 from Patent WO0220754. [AX721087] 11.0 23.4
A_23_P163481 BUB1B BUB1 budding uninhibited by benzimidazoles 1 homolog beta (yeast) (BUB1B), mRNA [NM_001211] 10.2 4.3
A_32_P57013 BU540282 AGENCOURT_10326456 NIH_MGC_141 cDNA clone IMAGE:6571686 5', mRNA [BU540282] 10.0 105.4
A_23_P319859 EYA2 eyes absent homolog 2 (Drosophila) (EYA2), transcript variant 2, mRNA [NM_172113] 9.9 4.2
A_32_P183765 ERBB4 v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) (ERBB4), mRNA [NM_005235] 9.6 8.6
A_23_P385861 CDCA2 cell division cycle associated 2 (CDCA2), mRNA [NM_152562] 9.4 6.8
A_32_P46456 THC2648851 glucosidase, beta (bile acid) 2 (GBA2), mRNA [NM_020944] 9.4 22.0
A_32_P30874 AJ420543 mRNA full length insert cDNA clone EUROIMAGE 1090207. [AJ420543] 9.3 30.6
A_24_P402588 BCL11A B-cell CLL/lymphoma 11A (zinc finger protein) (BCL11A), transcript variant 1, mRNA [NM_022893] 9.2 31.1
A_23_P210001 PAX8 paired box gene 8 (PAX8), transcript variant PAX8A, mRNA [NM_003466] 8.4 31.3
A_32_P136033 AK090477 mRNA for FLJ00399 protein. [AK090477] 8.4 12.8
A_23_P166508 BC038245 clone IMAGE:5241654, mRNA. [BC038245] 7.9 9.1
A_23_P18579 PTTG2 pituitary tumor-transforming 2 (PTTG2), mRNA [NM_006607] 7.5 7.8
A_23_P78958 CAPS calcyphosine (CAPS), transcript variant 1, mRNA [NM_004058] 7.2 11.1
A_23_P72411 CYP4X1 cytochrome P450, family 4, subfamily X, polypeptide 1 (CYP4X1), mRNA [NM_178033] 7.2 4.0
A_32_P151244 AK022268 cDNA FLJ12206 fis, clone MAMMA1000941. [AK022268] 7.0 22.2
A_23_P10385 1 DTL denticleless homolog (Drosophila) (DTL), mRNA [NM_016448] 6.5 5.4
A_23_P68669 CHODL chondrolectin (CHODL), mRNA [NM_024944] 6.4 9.6
A_32_P148745 FLJ14712 cDNA FLJ14712 fis, clone NT2RP3000825. [AK027618] 6.1 3.3
A_23_P151915 GCNT3 glucosaminyl (N-acetyl) transferase 3, mucin type. Acc:NP_004742] [ENST00000267857] 5.9 11.9
A_32_P77933 FLJ22795 colon cancer-associated antigen AgSK1-2HT-ECS mRNA, complete cds. [AF316855] 5.9 24.1
A_23_P31073 MYB v-myb myeloblastosis viral oncogene homolog (avian) (MYB), mRNA [NM_005375] 5.5 24.8
A_23_P28953 DNMT3B DNA (cytosine-5-)-methyltransferase 3 beta (DNMT3B), transcript variant 6, mRNA [NM_175850] 5.3 8.9
A_32_P117186 CR749547 mRNA; cDNA DKFZp686J17110 (from clone DKFZp686J17110) [CR749547] 5.0 4.1
A_32_P128558 FLJ22795 colon cancer-associated antigen AgSK1-2HT-ECS mRNA, complete cds. [AF316855] 4.8 15.7
A_23_P166360 PRAME preferentially expressed antigen in melanoma (PRAME), transcript variant 5, mRNA [NM_206956] 4.5 3.1
A_23_P103720 AGMAT agmatine ureohydrolase (agmatinase) (AGMAT), mRNA [NM_024758] 4.3 2.8
A_23_P42935 BRAF v-raf murine sarcoma viral oncogene homolog B1 (BRAF), mRNA [NM_004333] 4.2 3.6
A_24_P741023 BC008476 cDNA clone IMAGE:4290767. [BC008476] 3.9 18.5
A_23_P49972 CDC6 cell division cycle 6 homolog (S. cerevisiae) (CDC6), mRNA [NM_001254] 3.9 4.7
A_24_P925191 THC2640472 Q2M1U4_HUMAN (Q2M1U4) Catalase, partial (31%) [THC2640472] 3.9 6.5
A_24_P145316 DTNBP1 dystrobrevin binding protein 1 (DTNBP1), transcript variant 2, mRNA [NM_183040] 3.8 5.9
A_23_P19987 IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 (IGF2BP3), mRNA [NM_006547] 3.7 13.6
A_23_P1487681 F5 coagulation factor V (proaccelerin, labile factor) (F5), mRNA [NM_000130] 3.6 78.1
A_23_P37704 CDT1 chromatin licensing and DNA replication factor 1 (CDT1), mRNA [NM_030928] 3.5 7.5
A_24_P544543 CAPN1 cDNA FLJ12257 fis, clone MAMMA1001501, highly similar to CALPAIN 1. [AK022319] 3.1 8.2
A_23_P89570 ZMYND15 zinc finger, MYND-type containing 15 (ZMYND15), mRNA [NM_032265] 2.9 11.8
A_24_P340659 AF268613 POU 5 domain protein (POU5FLC1) mRNA, complete cds. [AF268613] 2.8 3.1
A_24_P343095 DHFR dihydrofolate reductase (DHFR), mRNA [NM_000791] 2.8 2.6
A_24_P257099 DKFZp762E1312 hypothetical protein DKFZp762E1312 (DKFZp762E1312), mRNA [NM_018410] 2.7 2.9
A_23_P110957 FOXF2 forkhead box F2 (FOXF2), mRNA [NM_001452] 2.7 3.9
A_23_P75260 RASSF4 Ras association (RalGDS/AF-6) domain family 4 (RASSF4), mRNA [NM_032023] 2.6 7.4
A_32_P81173 USP34 mRNA; cDNA DKFZp586J101 (from clone DKFZp586J101). [AL050376] 2.6 2.9
A_23_P156807 SDHAP3 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3 (SDHAP3) [NR_003263] 2.6 9.5
A_23_P109072 SALL4 sal-like 4 (Drosophila) (SALL4), mRNA [NM_020436] 2.6 3.5
A_32_P132563 POU5F1 POU domain, class 5, transcription factor 1 (POU5F1), transcript variant 1, mRNA [NM_002701] 2.5 10.8
A_23_P24870 1 CD44 CD44 molecule (Indian blood group) (CD44), transcript variant 1, mRNA [NM_000610] 2.5 5.2
  1. Genes associated with cancer in previous reports are shown in bold. Fold change P≤0.05. Genes are sorted according to descending FF tumor/nomal ratios.
  2. 1Probe is represented on microarrays multiple times; average of multiple measurements is reported here.