Skip to main content
Figure 3 | BMC Medical Genomics

Figure 3

From: Gene expression meta-analysis supports existence of molecular apocrine breast cancer with a role for androgen receptor and implies interactions with ErbB family

Figure 3

PCA of Combined Doane et al. and Farmer et al. Cohorts. First versus second component from Principal Components Analysis (PCA) of the combined cohorts from Farmer et al. (asterisks) and Doane et al. (circles) showing separation of molecular apocrine (green) and non-molecular apocrine (blue) tumors when performed on (A) natural-log scaled data quantile-normalized using Affymetrix-provided chip definition file (CDF); p-value = 0.369, (B) same as (A) with added XPN normalization step; p-value < 0.0001, and (C) same as (B) but using the AffyProbeMiner-provided CDF; p-value < 0.0001.

Back to article page

BMC Medical Genomics

ISSN: 1755-8794

Contact us