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Table 2 The details of SNVs analyzed in the study

From: Genetic integrity of the human Y chromosome exposed to groundwater arsenic

Target

SNV

Primers

Enzyme

Fragments

Allele

Present in copies

DAZ Genes SNVs

I

SA770

Fsp I

709

A

1,2,3

  

SA771

 

398+311

B

4

 

II (sY586)

SA446

Mbo I

182

A

1

  

SA447

 

122+60

B

2,3,4

 

III

SA772

Taq I

301

A

2

  

SA773

 

184+117

B

1,3,4

 

IV

SA774

Alu I

630

A

2

  

SA775

 

398+262

B

1,3,4

 

V (sY587)

SA444

Dra I

195+49

A

3,4

  

SA445

 

122+73+49

B

1,2

 

VI

SA776

Afl III

431

A

1,2,3

  

SA777

 

248+183

B

4

 

sY581

SA442

Sau3a

189+63

A

1,4

  

SA443

 

130+63+59

B

2,3

Blue Amplicons

b2_AZFc_SFV

SA1237

MnlI

653

A

b1, b3, b4

  

SA1238

 

452+197

B

b2

 

b3_AZFc_SFV

SA1239

XmaJI

510

A

b1, b2, b4

  

SA1240

 

261+249

B

b3

 

b4_AZFc_SFV

SA1241

HphI

630

A

b1, b2, b3

  

SA1242

 

347+282

B

b4

Green Amplicons

g1_AZFc_SFV

SA1243

Alw261

500

A

g2, g3

  

SA1244

 

272+224

B

g1

 

g2_AZFc_SFV

SA1245

NmuCI

274+180+38

A

g2

  

SA1246

 

274+137+38+28

B

g1, g3

 

g3_AZFc_SFV

SA1247

Alw261

400

A

g3

  

SA1248

 

251+163

B

g1, g2

Gr Amplicons

g_AZFc_SFV

SA1249

Eco1051

440

A

Gr1

  

SA1250

 

311+129

B

Gr2

GOLGA2LY Genes

GOLY/I

SA768

HhaI

531

A

1 copy

  

SA769

 

289+242

B

1 copy

BPY2 Genes

BPY2/I

SA766

EcoRV

470

A

2 copies

  

SA767

 

289+181

B

I copy

TTY4 Genes

TTY4/I

SA764

HaeIII

541

A

1 copy

  

SA765

 

323+218

B

2 copies

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BMC Medical Genomics

ISSN: 1755-8794

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