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Table 2 The details of SNVs analyzed in the study

From: Genetic integrity of the human Y chromosome exposed to groundwater arsenic

Target SNV Primers Enzyme Fragments Allele Present in copies
DAZ Genes SNVs I SA770 Fsp I 709 A 1,2,3
   SA771   398+311 B 4
  II (sY586) SA446 Mbo I 182 A 1
   SA447   122+60 B 2,3,4
  III SA772 Taq I 301 A 2
   SA773   184+117 B 1,3,4
  IV SA774 Alu I 630 A 2
   SA775   398+262 B 1,3,4
  V (sY587) SA444 Dra I 195+49 A 3,4
   SA445   122+73+49 B 1,2
  VI SA776 Afl III 431 A 1,2,3
   SA777   248+183 B 4
  sY581 SA442 Sau3a 189+63 A 1,4
   SA443   130+63+59 B 2,3
Blue Amplicons b2_AZFc_SFV SA1237 MnlI 653 A b1, b3, b4
   SA1238   452+197 B b2
  b3_AZFc_SFV SA1239 XmaJI 510 A b1, b2, b4
   SA1240   261+249 B b3
  b4_AZFc_SFV SA1241 HphI 630 A b1, b2, b3
   SA1242   347+282 B b4
Green Amplicons g1_AZFc_SFV SA1243 Alw261 500 A g2, g3
   SA1244   272+224 B g1
  g2_AZFc_SFV SA1245 NmuCI 274+180+38 A g2
   SA1246   274+137+38+28 B g1, g3
  g3_AZFc_SFV SA1247 Alw261 400 A g3
   SA1248   251+163 B g1, g2
Gr Amplicons g_AZFc_SFV SA1249 Eco1051 440 A Gr1
   SA1250   311+129 B Gr2
GOLGA2LY Genes GOLY/I SA768 HhaI 531 A 1 copy
   SA769   289+242 B 1 copy
BPY2 Genes BPY2/I SA766 EcoRV 470 A 2 copies
   SA767   289+181 B I copy
TTY4 Genes TTY4/I SA764 HaeIII 541 A 1 copy
   SA765   323+218 B 2 copies