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Table 2 Summary of Gene Regulation

From: Impact of RNA degradation on gene expression profiling

Comparison #Over-Represented #Under-Represented #Normally-Represented
TP1 vs Control 11 4 40985
TP2 vs Control 22 51 40937
TP3 vs Control 65 210 40725
  1. All genes are grouped by the type of regulation for all comparisons. To filter differentially expressed genes we used the following thresholds: fdr <5% and fold change greater 2 or less than 1/2.