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Table 3 Summary of diversity estimators Rarefaction, Shannon index, Ace, and Chao1

From: Evaluation of the bacterial diversity of Pressure ulcers using bTEFAP pyrosequencing

Variable Observations Minimum Maximum Mean Std. deviation
Rarefaction 3% 49 117.000 601.000 337.898 107.599
Rarefaction 5% 49 41.000 327.000 180.082 71.995
Shannon 3% 49 2.896 5.614 4.703 0.670
Shannon 5% 49 2.353 5.166 3.955 0.763
OTU 3% 49 117.000 601.000 337.898 107.599
OTU 5% 49 41.000 327.000 180.082 71.995
ACE 3% 49 181.962 911.814 446.255 159.805
ACE 5% 49 72.165 515.946 235.668 102.497
Chao1 3% 49 189.571 733.412 436.274 145.754
Chao1 5% 49 72.000 412.263 228.350 94.776
  1. Diversity metrics related to 3% and 5% divergence (species and genera levels respectively) are provided along with basic summary statistics. These include the minimum values across all samples, the maximum, the mean and the standard deviation.