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Table 1 Composition of LongSAGE libraries

From: LNCaP Atlas: Gene expression associated with in vivoprogression to castration-recurrent prostate cancer

Library S1885 S1886 S1887 S1888 S1889 S1890 S1891 S1892 S1893
Mouse-Condition 13N-AS* 13N-RAD† 13N-CR‡ 15N-AS 15N-RAD 15N-CR 13R-AS 13R-RAD 13R-CR
Unfiltered Total Tags 310,516 318,102 339,864 338,210 310,072 326,870 337,546 314,440 335,504
No. of Bad Tags 955 1,010 1,083 1,097 983 737 900 744 832
Minus Bad Tags          
Total Tags 309,561 317,092 338,781 337,113 309,089 326,133 336,646 313,696 334,672
Tag Types 79,201 96,973 99,730 81,850 84,499 88,249 79,859 91,438 90,675
No. of Duplicate Ditags 19,761 12,220 12,678 21,973 17,471 12,836 24,552 12,786 13,127
% of Duplicate Ditags 6.38 3.85 3.74 6.52 5.65 3.94 7.29 4.08 3.92
Average QF§ of Tags 0.85 0.88 0.87 0.86 0.89 0.88 0.88 0.80 0.87
No. of Tags QF < 0.95 63,057 62,872 71,576 68,993 54,627 54,470 68,981 101,215 69,647
Q ≥ 0.95          
Total Tags 246,504 254,220 267,205 268,120 254,462 271,663 267,665 212,481 265,025
Tag Types 52,033 67,542 66,748 52,606 59,374 64,985 53,715 54,682 64,837
Total Tags Combined      2,307,345     
Tag Types Combined      263,199     
No. of LDTs II Type I 124 72 174 179 84 186 164 118 301
No. of LDTs Type II 19 9 54 56 33 40 60 24 59
Minus LDTs          
Total Tags 246,361 254,139 266,977 267,885 254,345 271,437 267,441 212,339 264,665
Tag Types 52,031 67,540 66,746 52,604 59,372 64,983 53,713 54,680 64,835
Total Tags Combined      2,305,589     
Tag Types Combined      263,197     
  1. * AS, Androgen-sensitive
  2. † RAD, Responsive to androgen-deprivation
  3. ‡ CR, Castration-recurrent
  4. § QF, Quality Factor
  5. II LDTs, Linker-derived tags