LNCaP Atlas: Gene expression associated with in vivoprogression to castration-recurrent prostate cancer

BMC Medical Genomics

Table 1 Composition of LongSAGE libraries

Library	S1885	S1886	S1887	S1888	S1889	S1890	S1891	S1892	S1893
Mouse-Condition	13N-AS*	13N-RAD†	13N-CR‡	15N-AS	15N-RAD	15N-CR	13R-AS	13R-RAD	13R-CR
Unfiltered Total Tags	310,516	318,102	339,864	338,210	310,072	326,870	337,546	314,440	335,504
No. of Bad Tags	955	1,010	1,083	1,097	983	737	900	744	832
Minus Bad Tags
Total Tags	309,561	317,092	338,781	337,113	309,089	326,133	336,646	313,696	334,672
Tag Types	79,201	96,973	99,730	81,850	84,499	88,249	79,859	91,438	90,675
No. of Duplicate Ditags	19,761	12,220	12,678	21,973	17,471	12,836	24,552	12,786	13,127
% of Duplicate Ditags	6.38	3.85	3.74	6.52	5.65	3.94	7.29	4.08	3.92
Average QF§ of Tags	0.85	0.88	0.87	0.86	0.89	0.88	0.88	0.80	0.87
No. of Tags QF < 0.95	63,057	62,872	71,576	68,993	54,627	54,470	68,981	101,215	69,647
Q ≥ 0.95
Total Tags	246,504	254,220	267,205	268,120	254,462	271,663	267,665	212,481	265,025
Tag Types	52,033	67,542	66,748	52,606	59,374	64,985	53,715	54,682	64,837
Total Tags Combined					2,307,345
Tag Types Combined					263,199
No. of LDTs II Type I	124	72	174	179	84	186	164	118	301
No. of LDTs Type II	19	9	54	56	33	40	60	24	59
Minus LDTs
Total Tags	246,361	254,139	266,977	267,885	254,345	271,437	267,441	212,339	264,665
Tag Types	52,031	67,540	66,746	52,604	59,372	64,983	53,713	54,680	64,835
Total Tags Combined					2,305,589
Tag Types Combined					263,197

ISSN: 1755-8794