Skip to main content

Table 1 Lists of Data sets in the paper

From: Multi-cancer computational analysis reveals invasion-associated variant of desmoplastic reaction involving INHBA, THBS2 and COL11A1

Data set name

Source Site

GEO Accession

Affymetrix platform

Sample size

TCGA Ovarian Cancer

The Cancer Genome Atlas

 

HT_HG-U133Aa

377

CCR Ovarian Cancer

Gene Expression Omnibus

GSE9891

HG-U133_Plus_2b

285

CCR Colon Cancer

Gene Expression Omnibus

GSE14333

HG-U133_Plus_2

290

Moffitt Colon Cancer

Gene Expression Omnibus

GSE17536

HG-U133_Plus_2

177

Singapore Gastric Cancer

Gene Expression Omnibus

GSE15459

HG-U133_Plus_2

200

CCR Breast Cancer

Gene Expression Omnibus

GSE7390

HG-U133Ac

198

Wang Breast Cancer

Gene Expression Omnibus

GSE2034

HG-U133A

286

Samsung Lung Cancer

Gene Expression Omnibus

GSE8894

HG-U133_Plus_2

138

Bild Lung Cancer

Gene Expression Omnibus

GSE3141

HG-U133_Plus_2

111

Neuroblastoma tumor

Gene Expression Omnibus

GSE3960

HG_U95Av2

102

Neoadjuvant Breast Cancer

Gene Expression Omnibus

GSE4779

U133_X3P

[65] 102e

Postmortem - normal

Gene Expression Omnibus

GSE3526

HG-U133_Plus_2

353

Human body index - normal

Gene Expression Omnibus

GSE7307

HG-U133_Plus_2

504 [677]f

  1. aAffymetrix HT Human Genome U133A Array
  2. bAffymetrix Human Genome U133 Plus 2.0
  3. cAffymetrix Human Genome U133A
  4. d270 out of 341 samples are tumor samples.
  5. e65 out of 102 are ER-negative samples.
  6. f504 out of 677 samples are normal samples.