Skip to main content

Table 1 Lists of Data sets in the paper

From: Multi-cancer computational analysis reveals invasion-associated variant of desmoplastic reaction involving INHBA, THBS2 and COL11A1

Data set name Source Site GEO Accession Affymetrix platform Sample size
TCGA Ovarian Cancer The Cancer Genome Atlas   HT_HG-U133Aa 377
CCR Ovarian Cancer Gene Expression Omnibus GSE9891 HG-U133_Plus_2b 285
CCR Colon Cancer Gene Expression Omnibus GSE14333 HG-U133_Plus_2 290
Moffitt Colon Cancer Gene Expression Omnibus GSE17536 HG-U133_Plus_2 177
Singapore Gastric Cancer Gene Expression Omnibus GSE15459 HG-U133_Plus_2 200
CCR Breast Cancer Gene Expression Omnibus GSE7390 HG-U133Ac 198
Wang Breast Cancer Gene Expression Omnibus GSE2034 HG-U133A 286
Samsung Lung Cancer Gene Expression Omnibus GSE8894 HG-U133_Plus_2 138
Bild Lung Cancer Gene Expression Omnibus GSE3141 HG-U133_Plus_2 111
Neuroblastoma tumor Gene Expression Omnibus GSE3960 HG_U95Av2 102
Neoadjuvant Breast Cancer Gene Expression Omnibus GSE4779 U133_X3P [65] 102e
Postmortem - normal Gene Expression Omnibus GSE3526 HG-U133_Plus_2 353
Human body index - normal Gene Expression Omnibus GSE7307 HG-U133_Plus_2 504 [677]f
  1. aAffymetrix HT Human Genome U133A Array
  2. bAffymetrix Human Genome U133 Plus 2.0
  3. cAffymetrix Human Genome U133A
  4. d270 out of 341 samples are tumor samples.
  5. e65 out of 102 are ER-negative samples.
  6. f504 out of 677 samples are normal samples.