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Table 3 Gene lists produced from information provided in the corresponding papers for other cancers

From: Multi-cancer computational analysis reveals invasion-associated variant of desmoplastic reaction involving INHBA, THBS2 and COL11A1

Breast Cancer, Shuetz et ala Gastric cancer, Vecchi et alb Pancreatic cancer, Badea et alc
Probe Setd Gene Symbol Log FC Probe Setd Gene Symbol Log FC Probe Setd Gene Symbol Log FC
37892_at COL11A1 6.50 37892_at COL11A1 4.26 227140_at INHBA 5.15
204320_at COL11A1 4.08 217428_s_at COL10A1 4.15 217428_s_at COL10A1 5.00
217428_s_at COL10A1 4.07 209955_s_at FAP 3.40 1555778_a_at POSTN 4.92
213764_s_at MFAP5 3.73 235458_at HAVCR2 3.30 212353_at SULF1 4.63
213909_at LRRC15 3.61 204320_at COL11A1 3.28 226237_at COL8A1 4.60
205941_s_at COL10A1 3.52 205941_s_at COL10A1 3.21 37892_at COL11A1 4.40
210511_s_at INHBA 3.44 204052_s_at SFRP4 2.90 225681_at CTHRC1 4.38
202766_s_at FBN1 3.43 226930_at FNDC1 2.85 202311_s_at COL1A1 4.12
212353_at SULF1 3.35 227140_at INHBA 2.77 203083_at THBS2 3.97
218468_s_at GREM1 3.35 209875_s_at SPP1 2.77 227566_at HNT 3.90
215446_s_at LOX 3.22 205422_s_at ITGBL1 2.63 204619_s_at CSPG2 3.87
221730_at COL5A2 3.22 226311_at --- 2.63 229802_at WISP1 3.80
218469_at GREM1 3.20 222288_at --- 2.62 212464_s_at FN1 3.69
212489_at COL5A1 3.08 231993_at --- 2.50 205713_s_at COMP 3.53
203083_at THBS2 2.99 226237_at COL8A1 2.48 221729_at COL5A2 3.38
201505_at LAMB1 2.97 223122_s_at SFRP2 2.47 209955_s_at FAP 3.37
209955_s_at FAP 2.96 210511_s_at INHBA 2.43 229218_at COL1A2 3.16
209758_s_at MFAP5 2.92 203819_s_at IMP-3 2.39 209016_s_at KRT7 3.13
202363_at SPOCK 2.91 212464_s_at FN1 2.36 210004_at OLR1 3.03
213241_at NY-REN-58 2.90 212353_at SULF1 2.35 219773_at NOX4 3.02
205479_s_at PLAU 2.89 227995_at --- 2.34 218804_at TMEM16A 2.90
206584_at LY96 2.88 225681_at CTHRC1 2.30 238617_at --- 2.87
204475_at MMP1 2.83 204457_s_at GAS1 2.27 224694_at ANTXR1 2.82
202952_s_at ADAM12 2.83 216442_x_at FN1 2.25 228481_at COX7A1 2.77
201792_at AEBP1 2.81 223121_s_at SFRP2 2.23 226311_at ADAMTS2 2.76
204114_at NID2 2.81 211719_x_at FN1 2.23 201792_at AEBP1 2.68
213790_at ADAM12 2.80 204776_at THBS4 2.18 203021_at SLPI 2.65
209156_s_at COL6A2 2.77 210495_x_at FN1 2.15 227314_at ITGA2 2.58
219179_at DACT1 2.74 202800_at SLC1A3 2.13 205499_at SRPX2 2.44
212488_at COL5A1 2.73 214927_at --- 2.11 226997_at --- 2.41
219087_at ASPN 2.73 212354_at SULF1 2.09 219179_at DACT1 2.36
204619_s_at CSPG2 2.70 238654_at LOC147645 2.06 203570_at LOXL1 2.30
204337_at RGS4 2.69 213943_at TWIST1 2.06 201850_at CAPG 2.25
204620_s_at CSPG2 2.69 236028_at IBSP 2.05 222449_at TMEPAI 2.19
212354_at SULF1 2.68 228481_at POSTN 2.00 227276_at PLXDC2 2.16
  1. aBreast cancer list indicates genes overexpressed in invasive ductal carcinoma vs. ductal carcinoma in situ.
  2. bGastric cancer list indicates genes overexpressed in early gastric cancer vs. advanced gastric cancer.
  3. cPancreatic cancer list indicates genes overexpressed in pancreatic ductal adenocarcinoma vs. normal pancreatic tissue.
  4. dAffymetrix probe sets