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Table 3 Gene lists produced from information provided in the corresponding papers for other cancers

From: Multi-cancer computational analysis reveals invasion-associated variant of desmoplastic reaction involving INHBA, THBS2 and COL11A1

Breast Cancer, Shuetz et ala

Gastric cancer, Vecchi et alb

Pancreatic cancer, Badea et alc

Probe Setd

Gene Symbol

Log FC

Probe Setd

Gene Symbol

Log FC

Probe Setd

Gene Symbol

Log FC

37892_at

COL11A1

6.50

37892_at

COL11A1

4.26

227140_at

INHBA

5.15

204320_at

COL11A1

4.08

217428_s_at

COL10A1

4.15

217428_s_at

COL10A1

5.00

217428_s_at

COL10A1

4.07

209955_s_at

FAP

3.40

1555778_a_at

POSTN

4.92

213764_s_at

MFAP5

3.73

235458_at

HAVCR2

3.30

212353_at

SULF1

4.63

213909_at

LRRC15

3.61

204320_at

COL11A1

3.28

226237_at

COL8A1

4.60

205941_s_at

COL10A1

3.52

205941_s_at

COL10A1

3.21

37892_at

COL11A1

4.40

210511_s_at

INHBA

3.44

204052_s_at

SFRP4

2.90

225681_at

CTHRC1

4.38

202766_s_at

FBN1

3.43

226930_at

FNDC1

2.85

202311_s_at

COL1A1

4.12

212353_at

SULF1

3.35

227140_at

INHBA

2.77

203083_at

THBS2

3.97

218468_s_at

GREM1

3.35

209875_s_at

SPP1

2.77

227566_at

HNT

3.90

215446_s_at

LOX

3.22

205422_s_at

ITGBL1

2.63

204619_s_at

CSPG2

3.87

221730_at

COL5A2

3.22

226311_at

---

2.63

229802_at

WISP1

3.80

218469_at

GREM1

3.20

222288_at

---

2.62

212464_s_at

FN1

3.69

212489_at

COL5A1

3.08

231993_at

---

2.50

205713_s_at

COMP

3.53

203083_at

THBS2

2.99

226237_at

COL8A1

2.48

221729_at

COL5A2

3.38

201505_at

LAMB1

2.97

223122_s_at

SFRP2

2.47

209955_s_at

FAP

3.37

209955_s_at

FAP

2.96

210511_s_at

INHBA

2.43

229218_at

COL1A2

3.16

209758_s_at

MFAP5

2.92

203819_s_at

IMP-3

2.39

209016_s_at

KRT7

3.13

202363_at

SPOCK

2.91

212464_s_at

FN1

2.36

210004_at

OLR1

3.03

213241_at

NY-REN-58

2.90

212353_at

SULF1

2.35

219773_at

NOX4

3.02

205479_s_at

PLAU

2.89

227995_at

---

2.34

218804_at

TMEM16A

2.90

206584_at

LY96

2.88

225681_at

CTHRC1

2.30

238617_at

---

2.87

204475_at

MMP1

2.83

204457_s_at

GAS1

2.27

224694_at

ANTXR1

2.82

202952_s_at

ADAM12

2.83

216442_x_at

FN1

2.25

228481_at

COX7A1

2.77

201792_at

AEBP1

2.81

223121_s_at

SFRP2

2.23

226311_at

ADAMTS2

2.76

204114_at

NID2

2.81

211719_x_at

FN1

2.23

201792_at

AEBP1

2.68

213790_at

ADAM12

2.80

204776_at

THBS4

2.18

203021_at

SLPI

2.65

209156_s_at

COL6A2

2.77

210495_x_at

FN1

2.15

227314_at

ITGA2

2.58

219179_at

DACT1

2.74

202800_at

SLC1A3

2.13

205499_at

SRPX2

2.44

212488_at

COL5A1

2.73

214927_at

---

2.11

226997_at

---

2.41

219087_at

ASPN

2.73

212354_at

SULF1

2.09

219179_at

DACT1

2.36

204619_s_at

CSPG2

2.70

238654_at

LOC147645

2.06

203570_at

LOXL1

2.30

204337_at

RGS4

2.69

213943_at

TWIST1

2.06

201850_at

CAPG

2.25

204620_s_at

CSPG2

2.69

236028_at

IBSP

2.05

222449_at

TMEPAI

2.19

212354_at

SULF1

2.68

228481_at

POSTN

2.00

227276_at

PLXDC2

2.16

  1. aBreast cancer list indicates genes overexpressed in invasive ductal carcinoma vs. ductal carcinoma in situ.
  2. bGastric cancer list indicates genes overexpressed in early gastric cancer vs. advanced gastric cancer.
  3. cPancreatic cancer list indicates genes overexpressed in pancreatic ductal adenocarcinoma vs. normal pancreatic tissue.
  4. dAffymetrix probe sets