Table 1 All CNAs smaller than 1 Mb, identified with both ultra-dense platforms
# | Chromosome | Start position of CNA found only with 1 M platform | Start position of CNA found with both platforms | Amplification (A) or Deletion (D) | Length of CNA | Presence of known CNV | Number of genes involved | Names of genes involved |
|---|---|---|---|---|---|---|---|---|
1 | 3 | 194,358,885 | Â | A | 8,065 | CNV | 0 | Â |
2 | 1 | 150,841,957 | Â | D | 9,482 | CNV | 0 | Â |
3 | 7 | 109,230,336 | Â | D | 9,874 | CNV | 0 | Â |
4 | 7 | 141,698,634 | Â | D | 15,534 | CNV | 0 | Â |
5 | 17 | 4,986,617 | Â | A | 20,455 | Â | 1 | USP6 |
6 | 17 | 59,743,208 | Â | A | 31,300 | Â | 1 | PECAM1 |
7 | 1 | 72,539,143 | Â | A | 40,168 | CNV | 0 | Â |
8 | 18 | Â | 3.210,260 | A | 64,250 | Â | 3 | MYOM1 MYL12A MYL12B |
9 | 6 | 79,024,557 | Â | D | 67,293 | CNV | 0 | Â |
10 | 12 | 38,617,085 | Â | D | 68,417 | Â | 1* | SLC2A13 |
11 | 12 | 9,528,590 | Â | D | 81,464 | CNV | 0 | Â |
12 | 12 | 38,437,305 | Â | A | 91,984 | Â | 1* | SLC2A13 |
13 | 15 | Â | 32,482,458 | D | 96,025 | CNV | 1 | GOLGA8A |
14 | 5 | Â | 59,959,592 | A | 133,110 | Â | 2 | DEPDC1B ELOVL7 |
15 | 17 | Â | 78,519,743 | A | 133,802 | Â | 2 | B3GNTL1 METRNL |
16 | 20 | Â | 48,722,374 | A | 133,933 | CNV | 2 | BCAS4 PARD6B |
17 | 8 | Â | 39,356,595 | A | 148,661 | CNV | 2 | ADAM5P ADAM3A |
18 | 14 | Â | 37,104,288 | A | 149,393 | Â | 1 | FOXA1 |
19 | 20 | Â | 3,656,779 | A | 159,562 | Â | 7 | C20orf27 MAVS C20orf29 CDC25B CENPB SPEF1 HSPA12B |
20 | 20 | Â | 55,111,937 | A | 175,024 | Â | 1 | BMP7 |
21 | 4 | 91,703,176 | Â | D | 178,258 | Â | 1 | FAM190A |
22 | 6 | Â | 151,895,709 | A | 190,191 | Â | 2 | C6orf97 ESR1 |
23 | 1 | Â | 112,169,367 | A | 202,264 | Â | 1 | KCND3 |
24 | 9 | 21, 842,925 | Â | D | 221,323 | CNV | 4 | MTAP CDKN2A CDKN2B CDKN2BAS |
25 | 20 | Â | 14,879,882 | D | 229,686 | Â | 1 | MACROD2 |
26 | 1 | Â | 200,010,125 | D | 242,671 | Â | 7 | NAV1 IPO9 SHISA4 LMOD1 TIMM17A RNPEP ELF3 |
27 | 1 | Â | 120,065,684 | A | 349,836 | CNV | 6 | PHGDH HMGCS2 REG4 NBPF7 ADAM30 NOTCH2 |
28 | 17 | Â | 56,240,772 | A | 384,084 | Â | 1 | BCAS3 |
29 | 7 | Â | 64,328,811 | D | 393,567 | CNV | 3 | ZNF92 INTS4L1 INTS4L2 |
30 | 4 | Â | 182,164,553 | D | 410,882 | Â | 0 | Â |
31 | 7 | Â | 157,963,956 | A | 413,345 | Â | 4 | PTPRN2 NCAPG2 FAM62B WDR60 |
32 | 1 | 147,203,277 | Â | D | 441,554 | CNV | 3 | LOC645166 LOC388692 FCGR1C |
33 | 17 | Â | 70,788,571 | A | 541,784 | CNV | 14 | SLC25A19 GRB2 KIAA0195 CASKIN2 TSEN54 LLGL2 RECQL5 SAP30BP ITGB4 GALK1 H3F3B UNK MYO15B LOC643008 |
34 | 9 | Â | 637,589 | A | 558,789 | Â | 4 | KANK1 DMRT1 DMRT3 DMRT2 |
35 | 17 | Â | 42,299,184 | A | 602,830 | Â | 8 | WNT9B GOSR2 RPRML CDC27 MYL4 ITGB3 C17orf57 LOC100272146 |
36 | 3 | Â | 176,160,173 | A | 678,671 | Â | 1 | NAALADL2 |
37 | 3 | Â | 117,722,695 | D | 680,165 | Â | 1 | LOC285194 |
38 | 1 | 107,928,934 | Â | A | 910,775 | Â | 4 | VAV3 SLC25A24 NBPF4 NBPF6 |
39 | 12 | Â | 32, 954,990 | A | 988,660 | Â | 1 | SYT10 |