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Table 2 Genes involved in chromosomal rearrangements in MCF-7 cells, as identified by Hampton et al.

From: The use of ultra-dense array CGH analysis for the discovery of micro-copy number alterations and gene fusions in the cancer genome

Genes

Type of rearrangement

Intra-genic break (detected by array CGH)

Copy number alteration (detected by array CGH)

ARFGEF2

intrachromosomal inversion

yes

Amplification

ASTN2

interchromosomal

no

 

ATXN7

interchromosomal

yes

Amplification

BCAS4

interchromosomal and intrachromosomal inversion

yes

Amplification

BCAS3

interchromosomal

yes

Amplification

DEPDC1B

intrachromosomal translocation

yes

Amplification

ELOVL7

intrachromosomal translocation

yes

Amplification

NPEPPS

intrachromosomal inversion

no

Amplification

PRICKLE2

interchromosomal

no

Amplification

PRKCBP1

intrachromosomal inversion

no

Amplification

PTPRG

interchromosomal

yes

Amplification

RAD51C

interchromosomal

no

Amplification

RSBN1

interchromosomal

yes

Amplification

SULF2

interchromosomal

yes

Amplification

TBC1D16

interchromosomal

no

 

USP32

intrachromosomal inversion

yes

Amplification