|  |  |  | Stage 1 | Stage 2 |  | |
---|---|---|---|---|---|---|---|
Chromosome | Base pair | Marker | MAF | p-value | SNP effect* | p-value | Gene(s) |
3 | 59,877,841 | rs1825630 | 0.444 | 3.70 × 10-5 | 9.46 (2.11) | 7.99 × 10-6 | FHIT |
7 | 65,255,030 | rs875971 | 0.324 | 3.99 × 10-5 | 10.69 (2.24) | 4.09 × 10-6 | CRCP |
7 | 65,668,047 | rs801193 | 0.337 | 3.97 × 10-5 | 11.13 (2.23) | 3.65 × 10-6 | LOC401365, LOC493754 |
7 | 65,700,370 | rs10258739 | 0.318 | 2.11 × 10-5 | 10.64 (2.26) | 2.50 × 10-6 |  |
7 | 65,733,463 | AFFX 9317457 | 0.332 | 6.24 × 10-6 | 11.25 (2.23) | 6.20 × 10-7 | KCTD7, RABGEF1 |
7 | 65,733,463 | rs10263935 | 0.324 | 9.06 × 10-6 | 11.42 (2.28) | 4.26 × 10-7 | KCTD7, RABGEF1 |
7 | 65,790,536 | rs2659915 | 0.334 | 4.10 × 10-5 | 10.84 (2.22) | 4.27 × 10-6 | RABGEF1 |
8 | 117,625,451 | rs4876662 | 0.195 | 2.70 × 10-5 | 13.17 (2.58) | 2.23 × 10-6 |  |
16 | 57,316,833 | rs12600277 | 0.162 | 2.84 × 10-5 | 13.99 (2.98) | 2.72 × 10-6 | GOT2 |
20 | 1,888,504 | rs6045666 | 0.351 | 3.21 × 10-5 | 12.58 (2.26) | 2.97 × 10-6 | SIRPA, PDYN†|
20 | 1,889,171 | rs6045676 | 0.356 | 5.31 × 10-7 | 11.47 (2.28) | 3.28 × 10-8 | SIRPA, PDYN†|