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Table 1 Quality control metrics for training and fresh-frozen xenograft samples processed using the Affymetrix One-Cycle protocol

From: A methodology for utilization of predictive genomic signatures in FFPE samples

 

Average Background Value

3' to 5' Ratio β-actin

3' to 5' Ratio GAPDH

Percent Present

Scaling Factor

Training Samples

39.9-53.3

1.3-7.21

0.94-1.27

58.1-62.3

1.4-3.62

Fresh-Frozen Xenograft Samples

38.9-54.4

0.46-2.90

0.94-1.67

33.6-59.9

1.4-9.58