Quantifying stability in gene list ranking across microarray derived clinical biomarkers

BMC Medical Genomics

Table 1 Data sets used for this study with ArrayExpress identifiers, literature references and available meta data.

Array Express ID	Reference	Tissue	Sample size used	Clinical marker recorded	Affymetrix Platform
E-GEOD-10072	[16]	Lung	107	Tumor/control, Smoking	HG-U133A
E-GEOD- 6919	[13]	Prostate	171	Tumor/control	HG-U95Av2, B, C
E-GEOD- 6532	[18]	Breast	138	Grade, Size, Age, ER, relapse	HG-U133A, HG-U133B, HG-U133_Plus_2
E-GEOD- 7390	[15]	Breast	198	Grade, Size, ER, relapse	HG-U133A
E-GEOD-11121	[19]	Breast	200	Grade, Size, relapse	HG-U133A
E-TABM- 158	[14]	Breast	130	Grade, Size, Age, ER, relapse	HG-U133A
E-GEOD- 4922	[17]	Breast	249	Grade, Size, Age, ER	HG-U133A, HG-U133B
E-GEOD- 2990	[20]	Breast	189	Grade, Size, Age, ER, relapse	HG-U133A
E-GEOD- 5847	[12]	Breast	95	ER	HG-U133A
E-GEOD- 2034	[21]	Breast	286	ER, relapse	HG-U133A (preprocessed data downloaded)

ISSN: 1755-8794