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Table 3 Candidate gene fusions supported by PE and junction spanning reads with PEFS >= 5

From: Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines

Sample 5' partner 3' partner PEFS In-frame? Reference
HCC1937 NFIA EHF N/A Y [24]
SEC2 ETV6 NTRK3 5.0 Y [18, 34]
SUM149PT MTAP PCDH7 9.5 Y -
HCC3153 WWC1 ADRBK2 5.0 Y -
T50 ADNP C20orf132 10.0 Y -
T160 CCDC126 HSP90AA1 9.5 N -
  1. In addition to confirming two previously described gene fusions, we identified four novel gene fusions candidates that were selected based on our filtering criteria. Among these, three of the candidates were in-frame.