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Table 3 Summary of the temporal clusters obtained from the analysis of BMP4 data.

From: Analysis of BMP4 and BMP7 signaling in breast cancer cells unveils time-dependent transcription patterns and highlights a common synexpression group of genes

  Early Early-intermediate Late-intermediate Late Undetermined
  cluster ID genes/cluster cluster ID genes/cluster cluster ID genes/cluster cluster ID genes/cluster cluster ID genes/cluster
HCC1419 2 256 1 273 8 189 6 362 3 178
(14 clusters) 5 148 4 341    11 353 7 152
  10 107 14 31      9 224
  12 157         
  13 132         
Total   800   654   189   715   554
HCC1954 2 265 4 256 1 158 7 283   
(12 clusters) 5 353 9 258 3 419 10 156   
  6 108 11 244       
  8 110 12 251       
Total   836   1009   577   439   
MDA-MB-361 6 277 3 155 8 322 1 557 5 289
(14 clusters) 13 215 7 177 9 487 2 483 10 362
  14 355 12 270 11 554 4 564   
Total   847   602   1363   1604   651
SK-BR-3 1 77 2 232 3 235 4 252   
(17 clusters) 6 70 10 402 7 365 5 300   
  11 148 14 383 8 1322     
  13 567 16 332 9 1104     
  17 51    12 95     
      15 508     
Total   913   1349   3629   552   
ZR-75-30 1 601 9 140 4 2201 8 369 2 10
(18 clusters) 5 107 10 780 14 185 11 688 3 10
  12 53 18 436 16 809    6 9
  15 227        7 9
  17 1363        13 17
Total   2351   1356   3195   1057   55
  1. Gene clusters were classified in four temporal categories (early, early-intermediate, late-intermediate and late). Clusters with unclear profiles were classified as undetermined. The cluster ID column contains the ID number of the cluster.