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Table 4 Summary of the temporal clusters obtained from the analysis of BMP7 data.

From: Analysis of BMP4 and BMP7 signaling in breast cancer cells unveils time-dependent transcription patterns and highlights a common synexpression group of genes

  Early Early-intermediate Late-intermediate Late Undetermined
  cluster ID genes/cluster cluster ID genes/cluster cluster ID genes/cluster cluster ID genes/cluster cluster ID genes/cluster
HCC1954 2 32 4 66 3 226 1 197 6 119
(14 clusters) 5 324 12 113 10 116    13 113
  7 113 14 149       
  8 35         
  9 275         
  11 111         
Total   890   328   342   197   232
MDA-MB-231 6 97 4 41 2 175 1 335   
(16 clusters) 7 27 9 120 5 321 3 512   
  10 108 11 101 16 144 8 140   
  12 125 14 147       
  13 52 15 85       
Total   409   494   640   987   
MDA-MB-361 7 240 2 177 1 379 6 252   
(12 clusters) 8 193 3 235 5 328     
  11 258 4 230 9 58     
    10 336 12 73     
Total   691   978   838   252   
T-47D 2 767 8 212 1 183 5 1265 14 7
(14 clusters) 3 127 9 594 10 377 6 559   
  4 38 12 476       
  7 414         
  11 163         
  13 88         
Total   1597   1282   560   1824   7
ZR-75-30 3 205 2 169 11 105 14 87 1 8
(22 clusters) 5 286 4 30 12 196    7 16
  13 114 6 1544      9 37
  15 216 8 35      17 23
  20 250 10 1493      21 14
  22 36 16 147       
    18 85       
    19 336       
Total   1107   3839   301   87   98
  1. Gene clusters were classified in four temporal categories (early, early-intermediate, late-intermediate and late). Clusters with unclear profiles were classified as undetermined. The cluster ID column contains the ID number of the cluster.