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Table 1 Summary of studied loci and genes

From: Allele-specific disparity in breast cancer

  Original data
Chromosome Before Filtering After Filtering
  SNPs gene SNPs gene
1 9819 1606 8541 1530
2 8702 1055 7718 1030
3 7207 891 6401 861
4 6000 649 5392 626
5 6329 738 5644 712
6 6579 858 5890 832
7 5581 730 4941 708
8 4891 559 4334 541
9 4480 601 3989 581
10 5240 614 4571 593
11 5928 1050 5310 1000
12 5465 881 4781 847
13 3093 288 2794 285
14 3420 501 3013 481
15 3307 477 2928 463
16 3388 624 2909 586
17 4079 896 3584 858
18 2570 236 2260 234
19 3520 1058 3157 1001
20 3007 477 2572 446
21 1381 218 1267 213
22 1886 358 1629 345
X 3480 598 2648 530
Total 109352 15963 96273 15303
  1. Summary of all studied loci and genes in each chromosome before filtering of the data as well as the numbers of loci and genes showing disparity in both minor allele (AA) and major allele (BB) after removing the non-polymorphic or non-informative loci.