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Table 1 Summary of studied loci and genes

From: Allele-specific disparity in breast cancer

 

Original data

Chromosome

Before Filtering

After Filtering

 

SNPs

gene

SNPs

gene

1

9819

1606

8541

1530

2

8702

1055

7718

1030

3

7207

891

6401

861

4

6000

649

5392

626

5

6329

738

5644

712

6

6579

858

5890

832

7

5581

730

4941

708

8

4891

559

4334

541

9

4480

601

3989

581

10

5240

614

4571

593

11

5928

1050

5310

1000

12

5465

881

4781

847

13

3093

288

2794

285

14

3420

501

3013

481

15

3307

477

2928

463

16

3388

624

2909

586

17

4079

896

3584

858

18

2570

236

2260

234

19

3520

1058

3157

1001

20

3007

477

2572

446

21

1381

218

1267

213

22

1886

358

1629

345

X

3480

598

2648

530

Total

109352

15963

96273

15303

  1. Summary of all studied loci and genes in each chromosome before filtering of the data as well as the numbers of loci and genes showing disparity in both minor allele (AA) and major allele (BB) after removing the non-polymorphic or non-informative loci.
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BMC Medical Genomics

ISSN: 1755-8794

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