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Table 2 Cytoband SNP distribution of allelic disparity

From: Allele-specific disparity in breast cancer

Chr

Cytogenetic Band

Average of Score

Number of

SNPs in

cytoband

# of snps with

allelic disparity

(n = 13198)

Represented genes with disparity

11

11p11.11

100,0

1

1

OR4C46

12

12q11

85,7

1

1

CPNE8

15

15q22.32

77,5

3

2

SMAD6

2

2p15

91,2

85

36

CCT4,COMMD1,KIAA1841,LOC51057,MDH1,TMEM17,UGP2,USP34,XPO1

12

12q21.32

90,8

29

11

Cep290,FLJ35821,HGNT-IV-H,KITLG

3

3q12.2

90,4

50

18

ABI3BP,GPR128,IMPG2,NIT2,TFG,TOMM70A

3

3p11.1

89,5

42

15

CGGBP1,EPHA3,HTR1F,MGC26717,ZNF654

5

5q11.1

86,6

31

11

EMB,PARP8

3

3q13.13

89,6

108

37

CD96,DPPA2,DPPA4,DZIP3,ESRRBL1,GUCA1C,HHLA2,KIAA1524, MORC,PVRL3,TCRIM

9

9p13.1

83,3

3

1

FLJ35740

3

3q13.11

90,6

72

23

ALCAM,CBLB,LOC131368

2

2q33.2

84,8

38

12

ABI2,ALS2CR13,ALS2CR14,ALS2CR16,CD28,CYP20A1,ICOS,RAPH1

6

6q14.2

85,7

19

6

SNAP91,PGM3,KIAA1117,PRSS35,NCB5OR

3

3q12.3

92,2

67

21

FAM55C,IMPG2,LOC131368,NFKBIZ,PCNP,RPL24,SENP7

10

10p11.22

91,6

97

30

ARHGAP12,C10orf68,CCDC7,EPC1,ITGB1,KIF5B,NRP1,PARD3,TCF8

19

19p12

88,1

81

25

LOC148213,LOC163223,LOC91120,ZNF100,ZNF15L1,ZNF208,ZNF254, ZNF429,ZNF43,ZNF430, ZNF91

3

3p11.2

88,2

13

4

DKFZP564O123,HTR1F

12

12p12.2

89,4

36

11

PDE3A,SLCO1B1,SLCO1B3,SLCO1C1

2

2p12

88,2

181

55

C2orf3,CTNNA2,FLJ13391,HK2,LRRTM1,LRRTM4,MRPL19,PAP,POLE4, REG-III,SUCLG1,TACR1

4

4q13.2

87,5

100

30

BRDG1,CENPC1,DESC1,DKFZp686L1818,EPHA5,FLJ10808,FLJ16046, FLJ21934,GNRHR,HAT,LOC339967,UGT2B10,UGT2B4,UGT2B7,YT521

14

14q21.2

93,8

70

21

BTBD5,C14orf106,C14orf155,FKBP3,KIAA0423,LRFN5,PRPF39,RPL10L

  1. Chromosomal regions with a high degree of disparity per cytoband (S ≥ 7 5)