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Table 2 Cytoband SNP distribution of allelic disparity

From: Allele-specific disparity in breast cancer

Chr Cytogenetic Band Average of Score Number of
SNPs in
cytoband
# of snps with
allelic disparity
(n = 13198)
Represented genes with disparity
11 11p11.11 100,0 1 1 OR4C46
12 12q11 85,7 1 1 CPNE8
15 15q22.32 77,5 3 2 SMAD6
2 2p15 91,2 85 36 CCT4,COMMD1,KIAA1841,LOC51057,MDH1,TMEM17,UGP2,USP34,XPO1
12 12q21.32 90,8 29 11 Cep290,FLJ35821,HGNT-IV-H,KITLG
3 3q12.2 90,4 50 18 ABI3BP,GPR128,IMPG2,NIT2,TFG,TOMM70A
3 3p11.1 89,5 42 15 CGGBP1,EPHA3,HTR1F,MGC26717,ZNF654
5 5q11.1 86,6 31 11 EMB,PARP8
3 3q13.13 89,6 108 37 CD96,DPPA2,DPPA4,DZIP3,ESRRBL1,GUCA1C,HHLA2,KIAA1524, MORC,PVRL3,TCRIM
9 9p13.1 83,3 3 1 FLJ35740
3 3q13.11 90,6 72 23 ALCAM,CBLB,LOC131368
2 2q33.2 84,8 38 12 ABI2,ALS2CR13,ALS2CR14,ALS2CR16,CD28,CYP20A1,ICOS,RAPH1
6 6q14.2 85,7 19 6 SNAP91,PGM3,KIAA1117,PRSS35,NCB5OR
3 3q12.3 92,2 67 21 FAM55C,IMPG2,LOC131368,NFKBIZ,PCNP,RPL24,SENP7
10 10p11.22 91,6 97 30 ARHGAP12,C10orf68,CCDC7,EPC1,ITGB1,KIF5B,NRP1,PARD3,TCF8
19 19p12 88,1 81 25 LOC148213,LOC163223,LOC91120,ZNF100,ZNF15L1,ZNF208,ZNF254, ZNF429,ZNF43,ZNF430, ZNF91
3 3p11.2 88,2 13 4 DKFZP564O123,HTR1F
12 12p12.2 89,4 36 11 PDE3A,SLCO1B1,SLCO1B3,SLCO1C1
2 2p12 88,2 181 55 C2orf3,CTNNA2,FLJ13391,HK2,LRRTM1,LRRTM4,MRPL19,PAP,POLE4, REG-III,SUCLG1,TACR1
4 4q13.2 87,5 100 30 BRDG1,CENPC1,DESC1,DKFZp686L1818,EPHA5,FLJ10808,FLJ16046, FLJ21934,GNRHR,HAT,LOC339967,UGT2B10,UGT2B4,UGT2B7,YT521
14 14q21.2 93,8 70 21 BTBD5,C14orf106,C14orf155,FKBP3,KIAA0423,LRFN5,PRPF39,RPL10L
  1. Chromosomal regions with a high degree of disparity per cytoband (S ≥ 7 5)