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Table 3 Illumina genotype call rates (GCR)

From: Saliva samples are a viable alternative to blood samples as a source of DNA for high throughput genotyping

Sample

Mean SNP calls blood

DNA

Mean SNP calls saliva DNA

1

316,954

315,527

2

316,057

310,761

3

317,271

316,657

4

314,863

312,943

Overall

316,286/318,075 (99.4%)

313,972/318,075 (98.7%)

  1. The number of SNPs successfully genotyped/the total number SNPs common to both Illumina HumanHap370 and HumanHap550 chips (318,075) for the 4 samples tested.