Skip to main content

Table 3 Illumina genotype call rates (GCR)

From: Saliva samples are a viable alternative to blood samples as a source of DNA for high throughput genotyping

Sample Mean SNP calls blood
DNA 		Mean SNP calls saliva DNA
1 316,954 315,527
2 316,057 310,761
3 317,271 316,657
4 314,863 312,943
Overall 316,286/318,075 (99.4%) 313,972/318,075 (98.7%)
  1. The number of SNPs successfully genotyped/the total number SNPs common to both Illumina HumanHap370 and HumanHap550 chips (318,075) for the 4 samples tested.
Back to article page

BMC Medical Genomics

ISSN: 1755-8794

Contact us