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Table 1 Results of CNV calling based on different training sample batches for CNVhac and Birdsuite

From: Hybridization and amplification rate correction for affymetrix SNP arrays

 

Birdsuite

CNVhac

G1§

G2

G3

I

U†

Ratio‡

G1

G2

G3

I

U

Ratio

NA12156

17

19

21

14

22

0.64

15

17

18

15

17

0.88

NA12878

22

21

19

15

28

0.54

29

26

24

20

33

0.61

NA18507

19

15

20

10

23

0.43

16

20

20

15

21

0.71

NA18517

20

21

21

14

25

0.56

21

21

18

16

23

0.7

NA18555

16

16

15

11

20

0.55

16

14

17

11

18

0.61

NA18956

13

12

16

9

16

0.6

20

21

24

16

24

0.67

  1. §The number of predicted CNVs using group 1 for parameter training.
  2. The number of CNVs in intersection set of “G1”, “G2” and “G3”.
  3. †The number of CNVs in union set of “G1”, “G2” and “G3”.
  4. ‡The ratio of intersection to union.
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BMC Medical Genomics

ISSN: 1755-8794

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