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Table 2 Some information about the selected genes and SNPs

From: Candidate gene association study in pediatric acute lymphoblastic leukemia evaluated by Bayesian network based Bayesian multilevel analysis of relevance

SNP (rs#)

Gene

Alleles (1/2)a

Positionb

Functionc

rs2066853

AhR

G/A

chr7:17345635

missense/Arg>Lys

rs713150*

AhR

C/G

chr7:17306682

intron

rs2282885

AhR

T/C

chr7:17312139

intron

rs2282883

AhR

G/A

chr7:17322872

intron

rs2237297

AhR

C/T

chr7:17326119

intron

rs10994982*

ARID5B

A/G

chr10:63380110

intron

rs10821936

ARID5B

T/C

chr10:63393583

intron

rs7089424

ARID5B

T/G

chr10:63422165

intron

rs4948502

ARID5B

T/C

chr10:63509423

intron

rs4948496

ARID5B

T/C

chr10:63475623

intron

rs4948487

ARID5B

A/C

chr10:63339871

intron

rs4506592

ARID5B

G/A

chr10:63397193

intron

rs4509706

ARID5B

T/C

chr10:63331346

near-gene-5

rs3817074

BAX

C/T

chr19:54151024

intron

rs7259013

BAX

A/C

chr19:54155096

intron

rs11667351

BAX

T/G

chr19:54147966

near-gene-5

rs12457893

BCL2A

A/C

chr18:59077141

intron

rs11876772

BCL2A

A/G

chr18:58968686

intron

rs2850761

BCL2A

A/G

chr18:59117377

intron

rs8092560

BCL2A

T/A

chr18:58954673

intron

rs4987845

BCL2A

G/A

chr18:58946168

untranslated-3

rs1801018

BCL2B

A/G

chr18:59136859

coding-synon/Thr>Thr

rs1893806

BCL2B

T/G

chr18:59135944

near-gene-3

rs1799988

CCR5

C/T

chr3:46387263

untranslated-5

rs3087253

CCR5

T/C

chr3:46393693

near-gene-3

rs11575815

CCR5

T/A

chr3:46395174

unknown

rs10403561

CEBPA

A/G

chr19:38482342

near-gene-3

rs874966

CEBPA

A/G

chr19:38481237

near-gene-3

rs2239633

CEBPE

C/T

chr14:22658897

near-gene-5

rs8015478

CEBPE

C/A

chr14:22655858

near-gene-3

rs12434881

CEBPE

G/A

chr14:22658482

near-gene-5

rs11978267

IKZF1

A/G

chr7:50433798

intron

rs4132601

IKZF1

T/G

chr7:50438098

untranslated-3

rs6954833

IKZF1

A/G

chr7:50425940

intron

rs10235796

IKZF1

C/T

chr7:50430131

intron

rs6964969

IKZF1

A/G

chr7:50440745

near-gene-3

rs11208538**

JAK1

G/C

chr1:65161877

intron

rs310225

JAK1

G/A

chr1:65097271

intron

rs12063205

JAK1

A/G

chr1:65144640

intron

rs3212713

JAK3

G/A

chr19:17816001

intron

rs11888

JAK3

T/C

chr19:17796626

near-gene-3

rs2229974

NOTCH1

T/C

chr9:138511457

coding-synon/Asp>Asp

rs3124596

NOTCH1

A/G

chr9:138521325

intron

rs3124999

NOTCH1

C/T

chr9:138515294

intron

rs3124603

NOTCH1

T/C

chr9:138529998

intron

rs1800566

NQO1

C/T

chr16:68302646

missense/Pro>Ser

rs1469908

NQO1

A/G

chr16:68321913

unknown

rs1143684

NQO2

T/C

chr6:2955389

missense/Leu>Phe

rs2756075

NQO2

C/T

chr6:2949532

intron

rs4149352

NQO2

C/T

chr6:2947237

intron

rs2070999

NQO2

G/A

chr6:2944728

near-gene-5

rs4149360*

NQO2

G/A

chr6:2951806

intron

rs2030171

STAT1

G/A

chr2:191577408

intron

rs10208033

STAT1

T/C

chr2:191587662

near-gene-5

rs3088307

STAT1

G/C

chr2:191537657

untranslated-3

rs12949918

STAT3

T/C

chr17:37779799

intron

rs3809758

STAT3

G/A

chr17:37725506

intron

rs3816769

STAT3

T/C

chr17:37751799

intron

rs17405722

STAT3

G/A

chr17:37796027

near-gene-5

rs7217728

STAT5A

T/C

chr17:37700927

intron

rs3198502

STAT5A

G/T

chr17:37716520

untranslated-3

rs9906933

STAT5B

G/A

chr17:37663571

intron

rs4029774

STAT5B

A/G

chr17:37682487

near-gene-5

rs703817

STAT6

G/A

chr12:55776095

untranslated-3

rs3024979

STAT6

T/A

chr12:55774560

intron

rs324015

STAT6

G/A

chr12:55776367

untranslated-3

  1. *Failed genotyping, **Monomorphic, aAlleles on the forward strand; 1- major allele; 2-risk allele, bPosition according to NCBI Genome Build 36.0, cFunction according to CHIP Bioinformatics Tools http://snpper.chip.org/.
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BMC Medical Genomics

ISSN: 1755-8794

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