From: Histotype-specific copy-number alterations in ovarian cancer
Region | AMP | DEL | Cancer genes | ||||||
---|---|---|---|---|---|---|---|---|---|
C | E | M | S | C | E | M | S | ||
1p36.11 | D | MDS2 | |||||||
1q21.2-1q21.3 | A | ARNT,TPM3 | |||||||
1q21.1-1q23.1 | A | A | BCL9,MUC1,PRCC,NTRK1 | ||||||
1q42.13-1q44 | A | FH | |||||||
3q21.1-3q26.1 | A | FOXL2,GMPS,MLF1 | |||||||
3q26.31-3q29 | A | PIK3CA,ETV5,EIF4A2,BCL6,LPP,TFRC | |||||||
4q21.22-4q31.3 | D | RAP1GDS1,TET2,IL2,FBXW7 | |||||||
5q11.2-5q23.1 | D | IL6ST,PIK3R1,APC | |||||||
6p22.1-6p25.3 | A | IRF4,DEK,HIST1H4I | |||||||
6q22.2-6q27 | D | ROS1,GOPC,STL,MYB,TNFAIP3,FGFR1OP,MLLT4 | |||||||
7q32.1-7q36.3 | A | SMO,CREB3L2,KIAA1549,BRAF,EZH2 | |||||||
8p12-8p23.3 | D | PCM1,WRN,WHSC1L1 | |||||||
8q11.21-8q24.3 | A | A | HOOK3,TCEA1,CHCHD7,PLAG1,NCOA2,COX6C,EXT1,MYC,RECQL4 | ||||||
9p21.3-9p24.1 | D | JAK2,MLLT3 | |||||||
11p15.4 | D | CARS,NUP98,LMO1 | |||||||
11q13.3-11q21 | A | NUMA1,PICALM,MAML2 | |||||||
12p11.21-12p13.33 | A | KDM5A,CCND2,ZNF384,ETV6,KRAS | |||||||
13q12.2-13q14.3 | D | CDX2,FLT3,BRCA2,LHFP,LCP1 | |||||||
13q14.2 | D | D | RB1 | ||||||
15q14-15q15.1 | D | BUB1B | |||||||
16q13-16q23.3 | D | HERPUD1,CBFB,CDH1,MAF | |||||||
17p11.2-17p13.2 | D | D | USP6,TP53,PER1,GAS7,MAP2K4 | ||||||
17q11.1-17q21.31 | D | NF1,SUZ12,TAF15,MLLT6,LASP1,RARA,BRCA1 | |||||||
17q12 | A | D | ERBB2 | ||||||
18q21.32-18q22.2 | D | MALT1,BCL2 | |||||||
19p13.3 | D | FSTL3,STK11,TCF3,SH3GL1,MLLT1 | |||||||
20q11.21-20q13.33 | A | ASXL1,GNAS,SS18L1 | |||||||
22q11.21-22q13.33 | D | CLTCL1,MN1,CHEK2,EWSR1,NF2,MYH9,PDGFB,MKL1,MKL1,EP300 | |||||||
Xp11.3-Xp22.33 | D | P2RY8,KDM6A | |||||||
Xq25 | D | ELF4 |