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Table 3 Characteristics of the datasets used for cluster analysis

From: Integrative analysis of neuroblastoma and pheochromocytoma genomics data

Study

Accesion No.

Samples

Henderson et al., 2005 [23]

ArrayExpress: E-MEXP-353

4 alveolar rhabdomyosarcoma, 5 chondroblastoma, 4 chondromyxoid fibroma, 7 chondrosarcoma, 4 chondroma, 3 dedifferentiated chondrosarcoma, 3 embryonal rhabdomyosarcoma, 5 Ewing tumor, 5 fibromatosis, 8 leiomyosarcoma, 3 lipoma, 4 malignant peripheral nerve sheath tumor, 10 monophasic synovial sarcoma, 7 myxoid liposarcoma, 4 neurofibroma, 11 osteosarcoma, 3 sarcoma, 4 schwannoma, 3 well-differentiated liposarcoma

Giordano et al., 2006 [21]

ArrayExpress: E-GEOD-27155

4 anaplastic thyroid carcinoma, 10 follicular thyroid adenoma, 2 follicular thyroid carcinoma, 2 medullary thyroid carcinoma, 4 normal thyroid, 7 oncocytic thyroid adenoma, 8 oncocytic thyroid carcinoma, 13 papillary thyroid carcinoma

Freije et al., 2004 [20]

GEO: GSE4412

6 astrocytoma, 10 glioblastoma, 5 anaplastic mixed oligo-astrocytoma, 10 anaplastic oligodendroglioma

Tirode et al., 2007 [29]

ArrayExpress: E-GEOD-7007

11 Ewing tumor

Jones et al., 2005 [24]

ArrayExpress: E-GEOD-15641

6 chromophobe RCC, 10 clear cell RCC, 10 oncocytoma, 10 papillary RCC, 8 transitional cell carcinoma

Lenburg et al., 2003 [25]

ArrayExpress: E-GEOD-781

16 clear cell RCC, 1 normal kidney

De Preter et al., 2006 [12]

ArrayExpress: E-MEXP-669

3 adrenal cortex, 3 neuroblast

Albino et al., 2008 [11]

GEO: GSE7529

3 ganglioneuroblastoma, 6 ganglioneuroma

Boyault et al., 2007 [18]

ArrayExpress: E-TABM-36

17 hepatocellular carcinoma, 3 hepatocellular adenoma

Parent et al., 2008 [27]

ArrayÍExpress: E-GEOD-7142

4 hypothalamic hamartoma

Wong et al., 2005 [30]

ArrayExpress: E-GEOD-12907

5 juvenile pilocytic astrocytoma, 3 normal cerebellar tissue, 2 normal fetal brain

Su et al., 2007 [28]

ArrayExpress: E-GEOD-7670

1 large cell lung carcinoma, 14 lung adenocarcinoma, 12 normal lung

Monzon et al., 2009 [26]

GEO: GSE12630

1 medullary thyroid carcinoma

Harlin et al., 2009 [22]

ArrayExpress: E-GEOD-12627

13 melanoma

Salomon et al.,*

ArrayExpress: E-GEOD-4780

5 meningioma

Corbin et al., 2009 [19]

ArrayExpress: E-TABM-53

9 normal kidney, 11 Wilms' tumor

Mangiola et al.,*

ArrayExpress: E-GEOD-13276

3 normal white matter

  1. Asterisks mark studies where references were unavailable.