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Table 3 Characteristics of the datasets used for cluster analysis

From: Integrative analysis of neuroblastoma and pheochromocytoma genomics data

Study Accesion No. Samples
Henderson et al., 2005 [23] ArrayExpress: E-MEXP-353 4 alveolar rhabdomyosarcoma, 5 chondroblastoma, 4 chondromyxoid fibroma, 7 chondrosarcoma, 4 chondroma, 3 dedifferentiated chondrosarcoma, 3 embryonal rhabdomyosarcoma, 5 Ewing tumor, 5 fibromatosis, 8 leiomyosarcoma, 3 lipoma, 4 malignant peripheral nerve sheath tumor, 10 monophasic synovial sarcoma, 7 myxoid liposarcoma, 4 neurofibroma, 11 osteosarcoma, 3 sarcoma, 4 schwannoma, 3 well-differentiated liposarcoma
Giordano et al., 2006 [21] ArrayExpress: E-GEOD-27155 4 anaplastic thyroid carcinoma, 10 follicular thyroid adenoma, 2 follicular thyroid carcinoma, 2 medullary thyroid carcinoma, 4 normal thyroid, 7 oncocytic thyroid adenoma, 8 oncocytic thyroid carcinoma, 13 papillary thyroid carcinoma
Freije et al., 2004 [20] GEO: GSE4412 6 astrocytoma, 10 glioblastoma, 5 anaplastic mixed oligo-astrocytoma, 10 anaplastic oligodendroglioma
Tirode et al., 2007 [29] ArrayExpress: E-GEOD-7007 11 Ewing tumor
Jones et al., 2005 [24] ArrayExpress: E-GEOD-15641 6 chromophobe RCC, 10 clear cell RCC, 10 oncocytoma, 10 papillary RCC, 8 transitional cell carcinoma
Lenburg et al., 2003 [25] ArrayExpress: E-GEOD-781 16 clear cell RCC, 1 normal kidney
De Preter et al., 2006 [12] ArrayExpress: E-MEXP-669 3 adrenal cortex, 3 neuroblast
Albino et al., 2008 [11] GEO: GSE7529 3 ganglioneuroblastoma, 6 ganglioneuroma
Boyault et al., 2007 [18] ArrayExpress: E-TABM-36 17 hepatocellular carcinoma, 3 hepatocellular adenoma
Parent et al., 2008 [27] ArrayÍExpress: E-GEOD-7142 4 hypothalamic hamartoma
Wong et al., 2005 [30] ArrayExpress: E-GEOD-12907 5 juvenile pilocytic astrocytoma, 3 normal cerebellar tissue, 2 normal fetal brain
Su et al., 2007 [28] ArrayExpress: E-GEOD-7670 1 large cell lung carcinoma, 14 lung adenocarcinoma, 12 normal lung
Monzon et al., 2009 [26] GEO: GSE12630 1 medullary thyroid carcinoma
Harlin et al., 2009 [22] ArrayExpress: E-GEOD-12627 13 melanoma
Salomon et al.,* ArrayExpress: E-GEOD-4780 5 meningioma
Corbin et al., 2009 [19] ArrayExpress: E-TABM-53 9 normal kidney, 11 Wilms' tumor
Mangiola et al.,* ArrayExpress: E-GEOD-13276 3 normal white matter
  1. Asterisks mark studies where references were unavailable.