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Table 3 Characteristics and class assignment of the 117 Test Set samples.

From: Routine use of microarray-based gene expression profiling to identify patients with low cytogenetic risk acute myeloid leukemia: accurate results can be obtained even with suboptimal samples

UPN

Cell Source

Time

Blasts %

Dilution

QCC

Real Class

Assigned Class

Confidence

NB4

BM

Diagnosis

100

No Dilution

OK

APLs Test Set

APLs

10.802

NB4

BM

Diagnosis

100

No Dilution

OK

APLs Test Set

APLs

17.507

UPN53

BM

Diagnosis

43

Dilution 50%

OK

APLs Test Set

APLs

26.028

UPN22

BM

Diagnosis

40

Dilution 50%

OK

APLs Test Set

APLs

29.91

UPN65

BM

Diagnosis

39

Dilution 50%

OK

APLs Test Set

APLs

26.403

UPN40

BM

Diagnosis

33

Dilution 50%

OK

APLs Test Set

APLs

29.91

UPN50

PB

Diagnosis

27

Dilution 50%

OK

APLs Test Set

APLs

19.2

UPN53

BM

Diagnosis

22

Dilution 75%

OK

APLs Test Set

APLs

20.904

UPN22

BM

Diagnosis

20

Dilution 75%

OK

APLs Test Set

APLs

29.91

UPN65

BM

Diagnosis

20

Dilution 75%

OK

APLs Test Set

APLs

15.763

UPN40

BM

Diagnosis

16

Dilution 75%

OK

APLs Test Set

APLs

26.425

UPN5

PB

Diagnosis

15

No Dilution

OK

APLs Test Set

APLs

17.193

UPN50

PB

Diagnosis

14

Dilution 75%

OK

APLs Test Set

APLs

10.46

UPN48

PB

Diagnosis

11

No Dilution

OK

APLs Test Set

APLs

23.005

UPN53

BM

Diagnosis

9

Dilution 90%

OK

APLs Test Set

APLs

16.749

UPN22

BM

Diagnosis

8

Dilution 90%

OK

APLs Test Set

APLs

15.781

UPN40

BM

Diagnosis

7

Dilution 90%

OK

APLs Test Set

APLs

10.143

UPN86

PB

Diagnosis

7

No Dilution

OK

APLs Test Set

APLs

11.641

UPN50

PB

Diagnosis

6

Dilution 90%

OK

APLs Test Set

APLs

2.661

UPN22

BM

Diagnosis

4

Dilution 95%

OK

APLs Test Set

APLs

7.665

UPN53

BM

Diagnosis

4

Dilution 95%

OK

APLs Test Set

APLs

1.201

UPN40

BM

Diagnosis

3

Dilution 95%

OK

APLs Test Set

APLs

10.667

UPN50

PB

Diagnosis

3

Dilution 95%

OK

APLs Test Set

APLs

4.337

UPN59

PB

Diagnosis

70

No Dilution

Low RIN

APLs Test Set

APLs

26.497

UPN82

BM

Diagnosis

64

No Dilution

Low RIN

APLs Test Set

APLs

22.822

UPN13

BM

Diagnosis

30

No Dilution

Low cRNA

APLs Test Set

APLs

18.651

Kasumi-1

BM

Diagnosis

100

No Dilution

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

5.184

Kasumi-1

BM

Diagnosis

100

No Dilution

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

1.525

UPN30

PB

Diagnosis

49

Dilution 50%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

19.199

UPN69

PB

Diagnosis

41

Dilution 50%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

30.674

UPN51

BM

Relapse

38

Dilution 50%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

20.609

UPN76

PB

Diagnosis

31

No Dilution

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

32.067

UPN69

BM

Diagnosis

30

Dilution 50%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

25.183

UPN26

BM

Diagnosis

27

No Dilution

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

14.89

UPN30

PB

Diagnosis

25

Dilution 75%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

17.719

UPN61

BM

Diagnosis

24

Dilution 50%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

30.674

UPN69

PB

Diagnosis

21

Dilution 75%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

27.738

UPN21

BM

Diagnosis

21

No Dilution

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

24.116

UPN95

BM

Diagnosis

20

No Dilution

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

30.674

UPN51

BM

Relapse

19

Dilution 75%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

10.519

UPN94

PB

Diagnosis

16

No Dilution

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

28.631

UPN69

BM

Diagnosis

15

Dilution 75%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

22.744

UPN30

PB

Diagnosis

10

Dilution 90%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

16.958

UPN69

PB

Diagnosis

6

Dilution 90%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

13.468

UPN30

PB

Diagnosis

5

Dilution 95%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

13.581

UPN61

BM

Diagnosis

5

Dilution 90%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

28.443

UPN51

BM

Diagnosis

4

Dilution 90%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

3.096

UPN69

PB

Diagnosis

3

Dilution 95%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

12.875

UPN51

BM

Diagnosis

2

Dilution 95%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

4.6

UPN61

BM

Diagnosis

2

Dilution 95%

OK

t(8;21)-AMLs Test Set

t(8;21)-AMLs

19.237

UPN30

PB

Diagnosis

25

No Dilution

Low cRNA

t(8;21)-AMLs Test Set

t(8;21)-AMLs

15.256

ME-1

BM

Diagnosis

100

No Dilution

OK

inv(16)-AMLs Test set

inv(16)-AMLs

15.836

ME-1

BM

Diagnosis

100

No Dilution

OK

inv(16)-AMLs Test set

inv(16)-AMLs

18.901

UPN52

BM

Diagnosis

56

No Dilution

OK

inv(16)-AMLs Test set

inv(16)-AMLs

26.467

UPN45

BM

Diagnosis

50

Dilution 50%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

30.188

UPN31

BM

Diagnosis

50

No Dilution

OK

inv(16)-AMLs Test set

inv(16)-AMLs

29.511

UPN88

BM

Diagnosis

46

No Dilution

OK

inv(16)-AMLs Test set

inv(16)-AMLs

31.576

UPN47

BM

Diagnosis

41

Dilution 50%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

30.517

UPN37

BM

Diagnosis

40

No Dilution

OK

inv(16)-AMLs Test set

inv(16)-AMLs

28.551

UPN9

BM

Diagnosis

35

No Dilution

OK

inv(16)-AMLs Test set

inv(16)-AMLs

31.083

UPN87

PB

Diagnosis

35

No Dilution

OK

inv(16)-AMLs Test set

inv(16)-AMLs

29.511

UPN10

BM

Diagnosis

33

Dilution 50%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

17.561

UPN43

PB

Diagnosis

31

No Dilution

OK

inv(16)-AMLs Test set

inv(16)-AMLs

24.289

UPN52

BM

Diagnosis

28

Dilution 50%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

24.608

UPN45

BM

Diagnosis

25

Dilution 75%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

23.687

UPN67

PB

Diagnosis

24

No Dilution

OK

inv(16)-AMLs Test set

inv(16)-AMLs

31.576

UPN36

PB

Diagnosis

23

No Dilution

OK

inv(16)-AMLs Test set

inv(16)-AMLs

27.432

UPN47

BM

Diagnosis

20

Dilution 75%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

16.733

UPN37

BM

Diagnosis

20

Dilution 50%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

26.644

UPN10

BM

Diagnosis

16

Dilution 75%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

10.252

UPN52

BM

Diagnosis

14

Dilution 75%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

6.543

UPN37

PB

Relapse

14

No Dilution

OK

inv(16)-AMLs Test set

t(8;21)-AMLs

4.33

UPN45

BM

Diagnosis

10

Dilution 90%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

14.568

UPN47

BM

Diagnosis

10

Dilution 90%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

15.298

UPN37

BM

Diagnosis

10

Dilution 75%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

20.423

UPN10

BM

Diagnosis

7

Dilution 90%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

8.479

UPN52

BM

Diagnosis

6

Dilution 90%

OK

inv(16)-AMLs Test set

APLs

0.6

UPN45

BM

Diagnosis

5

Dilution 95%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

15.056

UPN47

BM

Diagnosis

5

Dilution 95%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

2.293

UPN7

BM

Relapse

5

No Dilution

OK

inv(16)-AMLs Test set

t(8;21)-AMLs

0.473

UPN10

BM

Diagnosis

4

Dilution 95%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

3.715

UPN52

BM

Diagnosis

3

Dilution 95%

OK

inv(16)-AMLs Test set

inv(16)-AMLs

3.79

UPN6

BM

Diagnosis

74

No Dilution

Low cRNA

inv(16)-AMLs Test set

inv(16)-AMLs

27.753

UPN45

BM

Diagnosis

25

No Dilution

Low cRNA

inv(16)-AMLs Test set

inv(16)-AMLs

31.005

UPN47

BM

Diagnosis

20

No Dilution

Low cRNA

inv(16)-AMLs Test set

inv(16)-AMLs

26.009

UPN79

BM

Diagnosis

47

No Dilution

Low cRNA

inv(16)-AMLs Test set

inv(16)-AMLs

29.75

UPN90

PB

Diagnosis

9

No Dilution

Low cRNA

inv(16)-AMLs Test set

inv(16)-AMLs

2.693

UPN23

BM

Diagnosis

27

No Dilution

Low RIN + Low cRNA

inv(16)-AMLs Test set

inv(16)-AMLs

24.111

UPN60

PB

Diagnosis

50

No Dilution

OK

NK-AMLs Test Set

inv(16)-AMLs

0.948

UPN72

BM

Diagnosis

49

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

26.707

UPN8

BM

Diagnosis

48

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

27.354

UPN44

PB

Diagnosis

47

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

28.541

UPN73

PB

Diagnosis

47

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

19.624

UPN97

BM

Diagnosis

47

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

22.934

UPN1

PB

Diagnosis

46

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

26.707

UPN66

BM

Diagnosis

46

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

23.454

UPN78

PB

Diagnosis

46

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

28.541

UPN25

BM

Diagnosis

43

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

21.699

UPN38

BM

Diagnosis

40

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

26.707

UPN74

BM

Diagnosis

40

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

19.777

UPN89

BM

Diagnosis

40

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

29.115

UPN19

BM

Diagnosis

39

No Dilution

OK

NK-AMLs Test Set

NK-AMLs

25.313

UPN11

BM

Diagnosis

37

Dilution 50%

OK

NK-AMLs Test Set

NK-AMLs

29.776

UPN96

PB

Diagnosis

35

No Dilution

OK

NK-AMLs Test Set

NK-AMLs

27.303

UPN72

BM

Diagnosis

25

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

26.707

UPN8

BM

Diagnosis

24

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

27.357

UPN44

PB

Diagnosis

24

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

29.235

UPN97

BM

Diagnosis

24

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

24.035

UPN1

PB

Diagnosis

23

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

26.707

UPN66

BM

Diagnosis

23

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

19

UPN73

PB

Diagnosis

23

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

24.104

UPN78

PB

Diagnosis

23

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

28.541

UPN25

BM

Diagnosis

21

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

18.99

UPN38

BM

Diagnosis

20

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

25.107

UPN74

BM

Diagnosis

20

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

19.705

UPN89

BM

Diagnosis

20

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

26.555

UPN11

BM

Diagnosis

19

Dilution 75%

OK

NK-AMLs Test Set

NK-AMLs

24.587

  1. UPN, unique patient number. BM, bone marrow. PB, peripheral blood. QCC, quality control criteria.
  2. Low cRNA, amount of labeled cRNA hybridized on the BeadChip below 750 ng. Low RIN, RNA integrity number below 7.00.