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Table 3 Characteristics and class assignment of the 117 Test Set samples.

From: Routine use of microarray-based gene expression profiling to identify patients with low cytogenetic risk acute myeloid leukemia: accurate results can be obtained even with suboptimal samples

UPN Cell Source Time Blasts % Dilution QCC Real Class Assigned Class Confidence
NB4 BM Diagnosis 100 No Dilution OK APLs Test Set APLs 10.802
NB4 BM Diagnosis 100 No Dilution OK APLs Test Set APLs 17.507
UPN53 BM Diagnosis 43 Dilution 50% OK APLs Test Set APLs 26.028
UPN22 BM Diagnosis 40 Dilution 50% OK APLs Test Set APLs 29.91
UPN65 BM Diagnosis 39 Dilution 50% OK APLs Test Set APLs 26.403
UPN40 BM Diagnosis 33 Dilution 50% OK APLs Test Set APLs 29.91
UPN50 PB Diagnosis 27 Dilution 50% OK APLs Test Set APLs 19.2
UPN53 BM Diagnosis 22 Dilution 75% OK APLs Test Set APLs 20.904
UPN22 BM Diagnosis 20 Dilution 75% OK APLs Test Set APLs 29.91
UPN65 BM Diagnosis 20 Dilution 75% OK APLs Test Set APLs 15.763
UPN40 BM Diagnosis 16 Dilution 75% OK APLs Test Set APLs 26.425
UPN5 PB Diagnosis 15 No Dilution OK APLs Test Set APLs 17.193
UPN50 PB Diagnosis 14 Dilution 75% OK APLs Test Set APLs 10.46
UPN48 PB Diagnosis 11 No Dilution OK APLs Test Set APLs 23.005
UPN53 BM Diagnosis 9 Dilution 90% OK APLs Test Set APLs 16.749
UPN22 BM Diagnosis 8 Dilution 90% OK APLs Test Set APLs 15.781
UPN40 BM Diagnosis 7 Dilution 90% OK APLs Test Set APLs 10.143
UPN86 PB Diagnosis 7 No Dilution OK APLs Test Set APLs 11.641
UPN50 PB Diagnosis 6 Dilution 90% OK APLs Test Set APLs 2.661
UPN22 BM Diagnosis 4 Dilution 95% OK APLs Test Set APLs 7.665
UPN53 BM Diagnosis 4 Dilution 95% OK APLs Test Set APLs 1.201
UPN40 BM Diagnosis 3 Dilution 95% OK APLs Test Set APLs 10.667
UPN50 PB Diagnosis 3 Dilution 95% OK APLs Test Set APLs 4.337
UPN59 PB Diagnosis 70 No Dilution Low RIN APLs Test Set APLs 26.497
UPN82 BM Diagnosis 64 No Dilution Low RIN APLs Test Set APLs 22.822
UPN13 BM Diagnosis 30 No Dilution Low cRNA APLs Test Set APLs 18.651
Kasumi-1 BM Diagnosis 100 No Dilution OK t(8;21)-AMLs Test Set t(8;21)-AMLs 5.184
Kasumi-1 BM Diagnosis 100 No Dilution OK t(8;21)-AMLs Test Set t(8;21)-AMLs 1.525
UPN30 PB Diagnosis 49 Dilution 50% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 19.199
UPN69 PB Diagnosis 41 Dilution 50% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 30.674
UPN51 BM Relapse 38 Dilution 50% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 20.609
UPN76 PB Diagnosis 31 No Dilution OK t(8;21)-AMLs Test Set t(8;21)-AMLs 32.067
UPN69 BM Diagnosis 30 Dilution 50% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 25.183
UPN26 BM Diagnosis 27 No Dilution OK t(8;21)-AMLs Test Set t(8;21)-AMLs 14.89
UPN30 PB Diagnosis 25 Dilution 75% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 17.719
UPN61 BM Diagnosis 24 Dilution 50% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 30.674
UPN69 PB Diagnosis 21 Dilution 75% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 27.738
UPN21 BM Diagnosis 21 No Dilution OK t(8;21)-AMLs Test Set t(8;21)-AMLs 24.116
UPN95 BM Diagnosis 20 No Dilution OK t(8;21)-AMLs Test Set t(8;21)-AMLs 30.674
UPN51 BM Relapse 19 Dilution 75% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 10.519
UPN94 PB Diagnosis 16 No Dilution OK t(8;21)-AMLs Test Set t(8;21)-AMLs 28.631
UPN69 BM Diagnosis 15 Dilution 75% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 22.744
UPN30 PB Diagnosis 10 Dilution 90% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 16.958
UPN69 PB Diagnosis 6 Dilution 90% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 13.468
UPN30 PB Diagnosis 5 Dilution 95% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 13.581
UPN61 BM Diagnosis 5 Dilution 90% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 28.443
UPN51 BM Diagnosis 4 Dilution 90% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 3.096
UPN69 PB Diagnosis 3 Dilution 95% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 12.875
UPN51 BM Diagnosis 2 Dilution 95% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 4.6
UPN61 BM Diagnosis 2 Dilution 95% OK t(8;21)-AMLs Test Set t(8;21)-AMLs 19.237
UPN30 PB Diagnosis 25 No Dilution Low cRNA t(8;21)-AMLs Test Set t(8;21)-AMLs 15.256
ME-1 BM Diagnosis 100 No Dilution OK inv(16)-AMLs Test set inv(16)-AMLs 15.836
ME-1 BM Diagnosis 100 No Dilution OK inv(16)-AMLs Test set inv(16)-AMLs 18.901
UPN52 BM Diagnosis 56 No Dilution OK inv(16)-AMLs Test set inv(16)-AMLs 26.467
UPN45 BM Diagnosis 50 Dilution 50% OK inv(16)-AMLs Test set inv(16)-AMLs 30.188
UPN31 BM Diagnosis 50 No Dilution OK inv(16)-AMLs Test set inv(16)-AMLs 29.511
UPN88 BM Diagnosis 46 No Dilution OK inv(16)-AMLs Test set inv(16)-AMLs 31.576
UPN47 BM Diagnosis 41 Dilution 50% OK inv(16)-AMLs Test set inv(16)-AMLs 30.517
UPN37 BM Diagnosis 40 No Dilution OK inv(16)-AMLs Test set inv(16)-AMLs 28.551
UPN9 BM Diagnosis 35 No Dilution OK inv(16)-AMLs Test set inv(16)-AMLs 31.083
UPN87 PB Diagnosis 35 No Dilution OK inv(16)-AMLs Test set inv(16)-AMLs 29.511
UPN10 BM Diagnosis 33 Dilution 50% OK inv(16)-AMLs Test set inv(16)-AMLs 17.561
UPN43 PB Diagnosis 31 No Dilution OK inv(16)-AMLs Test set inv(16)-AMLs 24.289
UPN52 BM Diagnosis 28 Dilution 50% OK inv(16)-AMLs Test set inv(16)-AMLs 24.608
UPN45 BM Diagnosis 25 Dilution 75% OK inv(16)-AMLs Test set inv(16)-AMLs 23.687
UPN67 PB Diagnosis 24 No Dilution OK inv(16)-AMLs Test set inv(16)-AMLs 31.576
UPN36 PB Diagnosis 23 No Dilution OK inv(16)-AMLs Test set inv(16)-AMLs 27.432
UPN47 BM Diagnosis 20 Dilution 75% OK inv(16)-AMLs Test set inv(16)-AMLs 16.733
UPN37 BM Diagnosis 20 Dilution 50% OK inv(16)-AMLs Test set inv(16)-AMLs 26.644
UPN10 BM Diagnosis 16 Dilution 75% OK inv(16)-AMLs Test set inv(16)-AMLs 10.252
UPN52 BM Diagnosis 14 Dilution 75% OK inv(16)-AMLs Test set inv(16)-AMLs 6.543
UPN37 PB Relapse 14 No Dilution OK inv(16)-AMLs Test set t(8;21)-AMLs 4.33
UPN45 BM Diagnosis 10 Dilution 90% OK inv(16)-AMLs Test set inv(16)-AMLs 14.568
UPN47 BM Diagnosis 10 Dilution 90% OK inv(16)-AMLs Test set inv(16)-AMLs 15.298
UPN37 BM Diagnosis 10 Dilution 75% OK inv(16)-AMLs Test set inv(16)-AMLs 20.423
UPN10 BM Diagnosis 7 Dilution 90% OK inv(16)-AMLs Test set inv(16)-AMLs 8.479
UPN52 BM Diagnosis 6 Dilution 90% OK inv(16)-AMLs Test set APLs 0.6
UPN45 BM Diagnosis 5 Dilution 95% OK inv(16)-AMLs Test set inv(16)-AMLs 15.056
UPN47 BM Diagnosis 5 Dilution 95% OK inv(16)-AMLs Test set inv(16)-AMLs 2.293
UPN7 BM Relapse 5 No Dilution OK inv(16)-AMLs Test set t(8;21)-AMLs 0.473
UPN10 BM Diagnosis 4 Dilution 95% OK inv(16)-AMLs Test set inv(16)-AMLs 3.715
UPN52 BM Diagnosis 3 Dilution 95% OK inv(16)-AMLs Test set inv(16)-AMLs 3.79
UPN6 BM Diagnosis 74 No Dilution Low cRNA inv(16)-AMLs Test set inv(16)-AMLs 27.753
UPN45 BM Diagnosis 25 No Dilution Low cRNA inv(16)-AMLs Test set inv(16)-AMLs 31.005
UPN47 BM Diagnosis 20 No Dilution Low cRNA inv(16)-AMLs Test set inv(16)-AMLs 26.009
UPN79 BM Diagnosis 47 No Dilution Low cRNA inv(16)-AMLs Test set inv(16)-AMLs 29.75
UPN90 PB Diagnosis 9 No Dilution Low cRNA inv(16)-AMLs Test set inv(16)-AMLs 2.693
UPN23 BM Diagnosis 27 No Dilution Low RIN + Low cRNA inv(16)-AMLs Test set inv(16)-AMLs 24.111
UPN60 PB Diagnosis 50 No Dilution OK NK-AMLs Test Set inv(16)-AMLs 0.948
UPN72 BM Diagnosis 49 Dilution 50% OK NK-AMLs Test Set NK-AMLs 26.707
UPN8 BM Diagnosis 48 Dilution 50% OK NK-AMLs Test Set NK-AMLs 27.354
UPN44 PB Diagnosis 47 Dilution 50% OK NK-AMLs Test Set NK-AMLs 28.541
UPN73 PB Diagnosis 47 Dilution 50% OK NK-AMLs Test Set NK-AMLs 19.624
UPN97 BM Diagnosis 47 Dilution 50% OK NK-AMLs Test Set NK-AMLs 22.934
UPN1 PB Diagnosis 46 Dilution 50% OK NK-AMLs Test Set NK-AMLs 26.707
UPN66 BM Diagnosis 46 Dilution 50% OK NK-AMLs Test Set NK-AMLs 23.454
UPN78 PB Diagnosis 46 Dilution 50% OK NK-AMLs Test Set NK-AMLs 28.541
UPN25 BM Diagnosis 43 Dilution 50% OK NK-AMLs Test Set NK-AMLs 21.699
UPN38 BM Diagnosis 40 Dilution 50% OK NK-AMLs Test Set NK-AMLs 26.707
UPN74 BM Diagnosis 40 Dilution 50% OK NK-AMLs Test Set NK-AMLs 19.777
UPN89 BM Diagnosis 40 Dilution 50% OK NK-AMLs Test Set NK-AMLs 29.115
UPN19 BM Diagnosis 39 No Dilution OK NK-AMLs Test Set NK-AMLs 25.313
UPN11 BM Diagnosis 37 Dilution 50% OK NK-AMLs Test Set NK-AMLs 29.776
UPN96 PB Diagnosis 35 No Dilution OK NK-AMLs Test Set NK-AMLs 27.303
UPN72 BM Diagnosis 25 Dilution 75% OK NK-AMLs Test Set NK-AMLs 26.707
UPN8 BM Diagnosis 24 Dilution 75% OK NK-AMLs Test Set NK-AMLs 27.357
UPN44 PB Diagnosis 24 Dilution 75% OK NK-AMLs Test Set NK-AMLs 29.235
UPN97 BM Diagnosis 24 Dilution 75% OK NK-AMLs Test Set NK-AMLs 24.035
UPN1 PB Diagnosis 23 Dilution 75% OK NK-AMLs Test Set NK-AMLs 26.707
UPN66 BM Diagnosis 23 Dilution 75% OK NK-AMLs Test Set NK-AMLs 19
UPN73 PB Diagnosis 23 Dilution 75% OK NK-AMLs Test Set NK-AMLs 24.104
UPN78 PB Diagnosis 23 Dilution 75% OK NK-AMLs Test Set NK-AMLs 28.541
UPN25 BM Diagnosis 21 Dilution 75% OK NK-AMLs Test Set NK-AMLs 18.99
UPN38 BM Diagnosis 20 Dilution 75% OK NK-AMLs Test Set NK-AMLs 25.107
UPN74 BM Diagnosis 20 Dilution 75% OK NK-AMLs Test Set NK-AMLs 19.705
UPN89 BM Diagnosis 20 Dilution 75% OK NK-AMLs Test Set NK-AMLs 26.555
UPN11 BM Diagnosis 19 Dilution 75% OK NK-AMLs Test Set NK-AMLs 24.587
  1. UPN, unique patient number. BM, bone marrow. PB, peripheral blood. QCC, quality control criteria.
  2. Low cRNA, amount of labeled cRNA hybridized on the BeadChip below 750 ng. Low RIN, RNA integrity number below 7.00.