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Table 2 Primer and probe sequences for TaqMan® Custom CN assays

From: Continuing difficulties in interpreting CNV data: lessons from a genome-wide CNV association study of Australian HNPCC/lynch syndrome patients

CNVchr7_CCHSNR9

Sequence

hg18

hg19

Forward primer

TTCTAGTTTTTAGCAGAAAGTATTTCCTTCTTCA

61,860,925

62,223,490

Reverse primer

TTTCATTCAGCTGTTTGGAAACACTATTTT

61,861,034

62,223,599

FAM-dye labelled probe

CATAGGCCTCAATGCGCTCCCAA

61,860,960

62,223,525

CNVchr16_CCD1S9P

Sequence

hg18

hg19

Forward primer

CTCCCAAATGTCCATTCACCAAAT

32,453,256

32,545,755

Reverse primer

TTTCTTATGTGTGCATTATTCTCACAGA

32,453,355

32,545,854

FAM-dye labelled probe

ACCTTTCCTTTGATTCAGCAGTTTT

32,453,299

32,545,798