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Table 3 Summary of the CN events were the frequency of the event was significantly different between cases and controls are listed in the table below

From: Continuing difficulties in interpreting CNV data: lessons from a genome-wide CNV association study of Australian HNPCC/lynch syndrome patients

Chromosome region

CN region

CN size

CN event

Frequency in cases

Frequency in controls

96 HNPCC/LS cases vs. 384 Controls

Nexus

QuantiSNP

7q11.21

61,682,801-61,827,108

140 kb

CN Gain

28%

0%

p =4.93E-21

p =5.00E-06

16p11.2

32,411,929-32,504,942

82.0 kb

CN Gain

46%

CN Loss 23%

p =3.6E-20

p <1.00E-16

  1. Nexus protocol 5 [53] was used to compare the sample groups. No genes, microRNA or CPG islands are present in any of the CN regions listed in the table.