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Table 2 Fibrate drug prediction ranks

From: Next-generation text-mining mediated generation of chemical response-specific gene sets for interpretation of gene expression data

  ToxProfiler Weighted global test GeneCodis single annotation
  CTD TM CTD TM CTD TM
clofibrate 7 (6.1e-10) 2 (<1e.-10) 22 (1.0e-03) 71 (1.0e-06) 5 (1.1e-04) 2 (7.6e-29)
gemfibrozil 53 (2.0e-01) 8 (<1e.-10) 35 (2.0e-03) 106 (5.4e-06) - 6 (3.5e-19)
bezafibrate 54 (2.5e-01) 7 (<1e.-10) 42 (2.1e-03) 105 (5.3e-06) - 5 (9.3e-22)
fenofibrate 3 (<1e.-10) 10 (<1e.-10) 27 (1.6e-03) 115 (7.1e-06) 3 (2.2e-07) 9 (1.5e-18)
ciprofibrate 33 (4.2e-02) 5 (<1e.-10) 21 (8.7e-04) 97 (2.6e-06) - 3 (3.1e-25)
WY14643 2 (<1e.-10) 4 (<1e.-10) 12 (5.5e-05) 118 (7.2e-06) 1 (3.2e-79) 4 (6.5e-22)
  1. Fibrate drug prediction ranks and false discovery rate-corrected p-values (within parentheses) for the PPARA gene expression data set for the different gene set analysis tools. Significant results (false discovery rate-corrected p<0.05) are in bold. GeneCodis only reports results with a false discovery rate-corrected p-value smaller than 0.05. Missing values denote such non-significant results. ToxProfiler does not report false discovery rate-corrected p-value less than 1.e-10. These are denoted as <1.e-10 in the table.