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Table 2 List of 40 genes that have CNAs significantly different between clusters A and B

From: Genetic lineages of undifferentiated-type gastric carcinomas analysed by unsupervised clustering of genomic DNA microarray data

Probe name Location Name of Gene Description P-value Pvalue after Bonferroni correction
A_16_P41637097 Xp21.2 DMD dystrophin 4.541E-08 1.251E-04
A_14_P133591 5q21-q22 APC adenomatous polyposis coli 5.774E-08 1.591E-04
A_14_P130973 4q11-q12 *KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 1.047E-07 2.886E-04
A_14_P125447 13q12-q14 SMAD9 SMAD family member 9 1.373E-07 3.784E-04
A_14_P100439 12q24.3 *RAN member RAS oncogene family 1.876E-07 5.171E-04
A_14_P102616 20q11.2 GDF5 growth differentiation factor 5 2.828E-07 7.794E-04
A_14_P133647 11q23.3 **ETS1 v-etserythroblastosis virus E26 oncogene homolog 1 (avian) 5.603E-07 0.0015
A_14_P138640 5p14.3 CDH18 cadherin 18, type 2 6.138E-07 0.0017
A_14_P128664 18q23 ATP9B ATPase, class II, type 9B 6.474E-07 0.0018
A_14_P124801 19p12 PBX4 pre-B-cell leukemia homeobox 4 1.010E-06 0.0028
A_14_P118423 Xq28 *RAB39B member RAS oncogene family 1.573E-06 0.0043
A_14_P134602 17q11.2 NF1 neurofibromin 1 1.802E-06 0.0050
A_14_P120351 5q31.1 IL5 interleukin 5 (colony-stimulating factor, eosinophil) 1.988E-06 0.0055
A_14_P125637 6q16.1 **EPHA7 EPH receptor A7 2.153E-06 0.0059
A_14_P100300 13q12-q14 SMAD9 SMAD family member 9 2.525E-06 0.0070
A_14_P201681 7p21.1 ITGB8 integrin, beta 8 2.589E-06 0.0071
A_14_P130112 Xp22.2 *RAB9A RAB9A, member RAS oncogene family 2.949E-06 0.0081
A_14_P120484 1q41 RPS6KC1 ribosomal protein S6 kinase, 52 kDa, polypeptide 1 3.052E-06 0.0084
A_16_P16709446 4q13.1 **EPHA5 EPH receptor A5 3.584E-06 0.0099
A_14_P201127 2q32 DLX2 distal-less homeobox 2 3.703E-06 0.0102
A_14_P126957 11p11.2 **SPI1 spleen focus forming virus (SFFV) proviral integration oncogene 4.334E-06 0.0119
A_14_P104667 8q22.2 STK3 serine/threonine kinase 3 4.386E-06 0.0121
A_14_P137889 14q13.3 NKX2-8 NK2 homeobox 8 5.393E-06 0.0149
A_14_P109970 1p36.1-p35 **EPHB2 Eph receptor B2 6.637E-06 0.0183
A_14_P118116 Xp21.2 DMD dystrophin 8.087E-06 0.0223
A_16_P01378894 5q34 ATP10B ATPase, class V, type 10B 8.165E-06 0.0225
A_14_P139456 17q25.1 *RAB37 member RAS oncogene family 1.001E-05 0.0276
A_14_P111361 17q21.2 KRT33B keratin 33B 1.069E-05 0.0295
A_14_P134909 19p13.3-p13.2 INSR insulin receptor 1.110E-05 0.0306
A_16_P02740008 13q12 ATP8A2 ATPase, aminophospholipid transporter, class I, type 8A, member 2 1.129E-05 0.0311
A_14_P102858 1q42 KIAA1804 mixed lineage kinase 4 1.155E-05 0.0318
A_14_P113857 12p13 **ETV6 ets variant 6 1.172E-05 0.0323
A_14_P115054 16q22.3 ZFHX3 zinc finger homeobox 3 1.180E-05 0.0325
A_14_P138431 1p32-p31 ROR1 receptor tyrosine kinase-like orphan receptor 1 1.209 E-05 0.0333
A_18_P22746653 3p25.3 ATP2B2 ATPase, Ca++ transporting, plasma membrane 2 1.282E-05 0.0353
A_14_P105811 11q13 MEN1 multiple endocrine neoplasia I 1.318E-05 0.0363
A_14_P136621 18q11.2 CDH2 cadherin 2, type 1, N-cadherin (neuronal) 1.420E-05 0.0391
A_14_P103176 1p34.3 **EPHA10 EPH receptor A10 1.455E-05 0.0401
A_16_P17370843 5q34 ATP10B ATPase, class V, type 10B 1.556E-05 0.0429
A_14_P108129 5p15.33 *TERT telomerase reverse transcriptase 1.584E-05 0.0436
A_16_P19750359 13q12 ATP8A2 ATPase, aminophospholipid transporter, class I, type 8A, member 2 1.586E-05 0.0437
A_14_P200005 1p36 ATP13A2 ATPase type 13A2 1.586E-05 0.0437
A_16_P01183532 5p15.2 **TRIO trio Rho guanine nucleotide exchange factor 1.786E-05 0.0492
  1. In the column of gene name, “*” indicates genes related to tumour growth and “**” those related to invasion and metastasis.