Genotyping of human neutrophil antigens (HNA) from whole genome sequencing data

BMC Medical Genomics

Table 3 Whole genome sequencing samples

HapMap family	Sample	Sex	Relation	SRA ID of dataset^a,b	Total reads in dataset	Filtered reads for HNA typing
YOR009	NA18507	male	father	ERX009609	1340M	3,542
	NA18508	female	mother	ERX009610	1327M	3,313
	NA18506	male	child	ERX009608	1320M	3,384
CEPH146	NA12891	male	father	ERX000172 ~ 3	980M	678
	NA12892	female	mother	ERX000174 ~ 5	978M	566
	NA12878	female	child	ERX000170 ~ 1	1109M	656

^aThe length of reads in the experiments ERX009608 ~ ERX009610 is 100bp from Illumina Genome Analyzer II.
^bThe length of reads in the experiments ERX000170 ~ ERX000175 is 36bp from Illumina Genome Analyzer.

ISSN: 1755-8794