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Table 3 Gene cluster enrichment (p-values) of tissue-specific genes, as well as of IM and/or SPEM related genes

From: Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker

Gene list Gene cluster
C1 C2.1 C2.2 C3 C4 A1 A2 A3
Cardiac/Fundic a 0.92c 0.92 0.92 1 7.42 x10 -06 1 1 0.92
Pyloric a 1 0.68 1 1 0.10 1 1 0.68
Small Intestinal a 1 1.81 x10 -26 2.57 x10 -02 1 0.82 0.82 1 0.23
Colonic a 1 8.78 x10 -12 7.67 x10 -03 1 1 0.72 1 0.35
IM up b 1 1.96 x10 -111 1.21 x10 -07 1 1 0.97 1 1
IM/SPEM up b 1 5.25 x10 -04 6.16 x10 -07 1 1 1 1 1
IM down b 1 1 1 1 5.86 x10 -37 1 0.99 1
  1. aP-values less than 0.05 are displayed in bold text. The gene lists were obtained from a publicly available reference dataset “Human Body Index – Transcriptional Profiling”.
  2. bThe gene lists were obtained from [16].
  3. cp-value.