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Table 1 Significantly over-represented gene ontology biological processes associated with differentially expressed genes in the colon of mice supplemented with adequate levels of selenium and folate post-weaning (n = 6 per treatment)

From: Post-weaning selenium and folate supplementation affects gene and protein expression and global DNA methylation in mice fed high-fat diets

Term

GOid

Gene name

Systematic name

Description

Fold change

P value

Organelle organization

GO:0006996

Top2a

NM_011623

Mus musculus topoisomerase (DNA) II alpha

−1.7

0.006

  

Stx6

NM_021433

Mus musculus syntaxin 6

−1.6

0.003

  

Col4a3bp

NM_023420

Mus musculus procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein

−1.5

0.004

  

Pom121

NM_148932

Mus musculus nuclear pore membrane protein 121

−1.7

0.004

  

Shprh

AK037266

Mus musculus 16 days neonate thymus

−1.6

0.003

Lipid homeostasis

GO:0055088

Col4a3bp

NM_023420

Mus musculus procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein

−1.5

0.004

  

Plscr3

NM_023564

Mus musculus phospholipid scramblase 3

−1.6

0.007

Cellular component organization

GO:0016043

Nov

NM_010930

Mus musculus nephroblastoma overexpressed gene

−1.7

0.005

  

Top2a

NM_011623

Mus musculus topoisomerase (DNA) II alpha

−1.7

0.006

  

Stx6

NM_021433

Mus musculus syntaxin 6

−1.6

0.003

  

Col4a3bp

NM_023420

Mus musculus procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein

−1.5

0.004

  

Pom121

NM_148932

Mus musculus nuclear pore membrane protein 121

−1.7

0.004

  

Shprh

AK037266

Mus musculus 16 days neonate thymus

−1.6

0.003

Nuclear pore organization

GO:0006999

Pom121

NM_148932

Mus musculus nuclear pore membrane protein 121

−1.7

0.004

Cellular process

GO:0009987

Heph

NM_181273

Mus musculus hephaestin, transcript variant 2

−1.5

0.001

  

Mef2a

NM_001033713

Mus musculus myocyte enhancer factor 2A

−1.6

0.001

  

Nov

NM_010930

Mus musculus nephroblastoma overexpressed gene

−1.7

0.005

  

Rora

AK087905

Mus musculus 2 days pregnant adult female ovary

−1.8

0.001

  

Top2a

NM_011623

Mus musculus topoisomerase (DNA) II alpha

−1.7

0.006

  

Mtmr1

NM_016985

Mus musculus myotubularin related protein 1

−1.6

0.008

  

Stx6

NM_021433

Mus musculus syntaxin 6

−1.6

0.003

  

Col4a3bp

NM_023420

Mus musculus procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein

−1.5

0.004

  

Pom121

NM_148932

Mus musculus nuclear pore membrane protein 121

−1.7

0.004

  

Shprh

AK037266

Mus musculus 16 days neonate thymus

−1.6

0.003

  

Podxl2

NM_176973

Mus musculus podocalyxin-like 2

−1.6

0.005

DNA packaging

GO:0006323

Top2a

NM_011623

Mus musculus topoisomerase (DNA) II alpha

−1.7

0.006

  

Shprh

AK037266

Mus musculus 16 days neonate thymus

−1.6

0.003

DNA conformation change

GO:0071103

Top2a

NM_011623

Mus musculus topoisomerase (DNA) II alpha

−1.7

0.006

  

Shprh

AK037266

Mus musculus 16 days neonate thymus

−1.6

0.003

DNA metabolic process

GO:0006259

Top2a

NM_011623

Mus musculus topoisomerase (DNA) II alpha

−1.7

0.006

  

Shprh

AK037266

Mus musculus 16 days neonate thymus

−1.6

0.003

  1. A positive fold change indicates that supplementation increased the expression of the gene.