| | | | |
Our study a(Chinese, discovery stage)
|
Japanese
|
European ancestry
|
---|
Gene
|
SNP
|
Chr
|
Position
|
Location
|
MAF (allele)
|
Effect size
|
P-value
|
MAF (allele)
|
Effect size
|
P-value
|
MAF (allele)
|
Effect size
|
P-value
|
---|
PDZK1
|
rs12129861
|
1
|
144437046
|
5′-
|
0.20(A)
|
−0.011
|
0.074
|
0.087(A)
|
--
|
--
|
0.46(A)
|
−0.062 [20]
|
2.68 × 10-9
|
TRIM46
|
rs11264341
|
1
|
153418117
|
Intron
|
0.33(C)
|
0.017
|
4.49 × 10-3
|
0.24(C)
|
0.074 [25]
|
9.5× 10–4
|
0.43(T)
|
−0.050 [25]
|
6.2 × 10–19
|
INHBB
|
rs17050272
|
2
|
121022910
|
N/A
|
0.45(A)
|
0.008
|
0.174
|
0.49(A)
|
0.033 [25]
|
4.4× 10–2
|
0.43(A)
|
0.035 [25]
|
1.6 × 10–10
|
GCKR
|
rs780094
|
2
|
27594741
|
Intron
|
0.44(T)
|
0.0133
|
0.014
|
0.43(T)
|
0.036 [27]
|
5.12 × 10-6
|
0.42(T)
|
0.050 [20]
|
1.40 × 10-9
|
LRP2
|
rs2544390
|
2
|
169913092
|
Intron
|
0.49(C)
|
−0.001
|
0.73
|
0.49(C)
|
−0.082 [27]
|
3.74 × 10-8
|
0.37(T)
|
--
|
--
|
SFMBT1
|
rs6770152
|
3
|
53075254
|
N/A
|
0.36(T)
|
−0.010
|
0.071
|
0.46(T)
|
−0.016 [25]
|
0.31
|
0.42(G)
|
0.044 [25]
|
2.6 × 10–16
|
SLC2A9
|
rs11722228
|
4
|
9524839
|
Intron
|
0.31(T)
|
0.028
|
3.68 × 10-6
|
0.45(T)
|
0.164 [27]
|
7.09 × 10-24
|
0.50(T)
|
0.167 [20]
|
1.75 × 10-75
|
SLC2A9
|
rs16890979
|
4
|
9531265
|
Exon
|
0.02(T)
|
−0.024
|
0.285
|
0.01(T)
|
−0.178 [27]
|
3.07 × 10-2
|
0.29(T)
|
−0.340 [20]
|
3.55 × 10-189
|
SLC2A9
|
rs734553
|
4
|
9532102
|
Intron
|
0.02(C)
|
−0.023
|
0.286
|
0.006(C)
|
--
|
--
|
0.23(C)
|
0.315 [20]
|
5.22 × 10-201
|
ABCG2
|
rs3114018
|
4
|
89283605
|
Intron
|
0.38(T)
|
−0.034
|
2.75 × 10-9
|
0.26(A)
|
--
|
--
|
0.48(G)
|
−0.057 [20]
|
2.93 × 10-12
|
ABCG2
|
rs2231142
|
4
|
89271347
|
Exon
|
0.29(T)
|
0.046
|
1.19 × 10-14
|
0.31(T)
|
0.121 [27]
|
1.62 × 10-13
|
0.11(T)
|
0.173 [20]
|
3.10 × 10-26
|
ABCG2
|
rs4148152
|
4
|
89279933
|
Intron
|
0.35(C)
|
−0.029
|
1.22 × 10-7
|
0.19( C)
|
--
|
--
|
0.017(C)
|
--
|
--
|
ABCG2
|
rs4148155
|
4
|
89273691
|
Intron
|
0.29(A)
|
−0.046
|
9.23 × 10-15
|
0.30(G)
|
0.121 [27]
|
1.14 × 10-13
|
0.11(A)
|
−0.170 [20]
|
1.50 × 10-25
|
TMEM171
|
rs17632159
|
5
|
72467238
|
N/A
|
0.31(C)
|
−0.009
|
0.129
|
0.28(C)
|
−0.045 [25]
|
0.011
|
0.31(C)
|
−0.039 [25]
|
3.5 × 10–11
|
VEGFA
|
rs729761
|
6
|
43912549
|
N/A
|
0.14(T)
|
−0.013
|
0.092
|
0.07(T)
|
0.002 [25]
|
0.97
|
0.30(T)
|
−0.047 [25]
|
8.0 × 10–16
|
LRRC16A
|
rs742132
|
6
|
25715550
|
Intron
|
0.25(A)
|
−0.001
|
0.8705
|
0.31(A)
|
0.008 [27]
|
0.609
|
0.30(A)
|
0.054 [20]
|
8.50 × 10-9
|
SLC17A1
|
rs1183201
|
6
|
25931423
|
Intron
|
0.18(A)
|
−0.009
|
0.2
|
0.16(A)
|
−0.063 [27]
|
1.73 × 10-3
|
0.48(A)
|
−0.062 [20]
|
3.04 × 10-14
|
SLC17A3
|
rs1165205
|
6
|
25978521
|
Intron
|
0.19(T)
|
−0.010
|
0.139
|
0.16(T)
|
−0.07 [27]
|
5.04 × 10-4
|
0.48(T)
|
0.060 [20]
|
1.60 × 10-13
|
PRKAG2
|
rs10480300b
|
7
|
151036938
|
Intron
|
0.00(T)
|
--
|
--
|
0.00(T)
|
--
|
--
|
0.28(T)
|
0.035 [25]
|
4.1 × 10–9
|
BAZ1B
|
rs1178977
|
7
|
72494985
|
Intron
|
0.08(G)
|
0.011
|
0.291
|
0.11(G)
|
−0.058 [25]
|
0.025
|
0.19(G)
|
−0.047 [25]
|
1.2 × 10–12
|
STC1
|
rs17786744
|
8
|
23832951
|
N/A
|
0.35(G)
|
0.0001
|
0.989
|
0.25(G)
|
0.018 [25]
|
0.32
|
0.42(G)
|
0.029 [25]
|
1.4 × 10–8
|
HNF4G
|
rs2941484
|
8
|
76641323
|
3utr
|
0.32(T)
|
0.024
|
1.7× 10-5
|
0.43(T)
|
0.050 [25]
|
1.8× 10-3
|
0.44(T)
|
0.044 [25]
|
4.4 × 10–17
|
A1CF
|
rs10821905
|
10
|
52316099
|
5′near gene
|
0.04(A)
|
0.008
|
0.584
|
0.05(A)
|
0.075 [25]
|
0.042
|
0.18(A)
|
0.057 [25]
|
7.4 × 10–17
|
SLC16A9
|
rs12356193b
|
10
|
61083359
|
Intron
|
0.00(C)
|
--
|
--
|
0.00(C)
|
--
|
--
|
0.18(C)
|
0.080 [20]
|
1.07 × 10-8
|
SLC22A11
|
rs17300741
|
11
|
64088038
|
Intron
|
0.07(A)
|
0.018
|
0.087
|
0.03(A)
|
0.063 [27]
|
0.197
|
0.49(A)
|
0.060 [20]
|
6.68 × 10-14
|
SLC22A12
|
rs505802
|
11
|
64113648
|
Intron
|
0.23(T)
|
−0.008
|
0.196
|
0.18(T)
|
−0.231 [27]
|
1.00 × 10-31
|
0.30(T)
|
−0.060 [20]
|
2.04 × 10-9
|
SLC22A12
|
rs506338
|
11
|
64197496
|
Intron
|
0.23(C)
|
−0.005
|
0.502
|
0.17(C)
|
−0.229 [27]
|
2.34 × 10-31
|
0.29(T)
|
--
|
--
|
ATXN2
|
rs653178b
|
12
|
110492139
|
Intron
|
0.00(C)
|
--
|
--
|
0.00(C)
|
--
|
--
|
0.49(C)
|
0.035 [25]
|
7.2 × 10–12
|
UBE2Q2
|
rs1394125
|
15
|
73946038
|
Intron
|
0.008(A)
|
0.014
|
0.188
|
0.08(A)
|
0.021 [25]
|
0.48
|
0.34(A)
|
0.043 [25]
|
2.5 × 10–13
|
IGF1R
|
rs6598541
|
15
|
97088658
|
Intron
|
0.41(A)
|
0.015
|
9.85× 10-3
|
0.50(A)
|
0.033 [25]
|
0.038
|
0.36(A)
|
0.043 [25]
|
4.8 × 10–15
|
NFAT5
|
rs7193778
|
16
|
68121391
|
N/A
|
0.05(C)
|
0.004
|
0.769
|
0.10(C)
|
0.053 [25]
|
0.048
|
0.14(C)
|
0.046 [25]
|
8.2 × 10–10
|
MAF
|
rs7188445
|
16
|
78292488
|
N/A
|
0.27(A)
|
−0.003
|
0.592
|
0.31(A)
|
−0.06 [25]
|
4.5× 10-4
|
0.33(A)
|
−0.032 [25]
|
1.6 × 10–9
|
HLF
|
rs7224610
|
17
|
50719787
|
Intron
|
0.13(C)
|
0.004
|
0.579
|
0.18(C)
|
0.004 [25]
|
0.83
|
0.42(C)
|
0.042 [25]
|
5.4 × 10–17
|
- The NCBI build 36 was used as the reference genome. aSample size, 3451, the P values in Han Chinese population were from meta-analysis of two GWASs (DFTJ-cohort and FAMHES) in discovery stage; --, information is not available. bThese SNP is monoallelic in HapMap CHB and HapMap JPT.