Table 5 Summary of WES coverage statistics
From: Analytical validation of whole exome and whole genome sequencing for clinical applications
Replicate | Mean | % Bases > =1X | % Bases > =10X | % Bases > =20X | % Bases > =30X | % Coding bases callable |
|---|---|---|---|---|---|---|
NA12878 | ||||||
r1-1-1 | 57.4 | 96.8 | 93.6 | 89.2 | 79.3 | 83.8 |
r1-1-2 | 57.4 | 96.8 | 93.6 | 89.1 | 79.3 | 83.8 |
r2-1-1 | 66.8 | 96.2 | 92.0 | 85.4 | 75.2 | 79.7 |
r3-1-1 | 81.8 | 96.7 | 93.6 | 90.7 | 85.1 | 84.8 |
r3-2-1 | 74.5 | 96.7 | 93.6 | 90.8 | 85.0 | 85.1 |
r4-1-1 | 83.7 | 96.7 | 93.7 | 90.9 | 85.5 | 85.0 |
r4-2-1 | 73.6 | 96.6 | 93.2 | 89.1 | 81.5 | 83.1 |
NA12891 | ||||||
r3-1-3 | 70.9 | 96.5 | 92.4 | 86.0 | 75.8 | 80.1 |
r4-1-3 | 70.8 | 96.6 | 92.5 | 85.9 | 75.7 | 80.2 |
r4-2-3 | 60.9 | 96.3 | 91.4 | 82.2 | 69.8 | 76.5 |
NA12892 | ||||||
r3-1-4 | 70.7 | 96.5 | 92.7 | 87.5 | 78.7 | 82.5 |
r4-1-4 | 71.4 | 96.6 | 92.8 | 87.7 | 79 | 82.7 |
r4-2-4 | 61.7 | 96.4 | 91.9 | 84.5 | 73.2 | 79.7 |
NA18507 | ||||||
r2-1-2 | 66.4 | 96.4 | 92.1 | 84.7 | 73.8 | 78.7 |
r2-1-3 | 92.2 | 96.7 | 93.6 | 90.9 | 86.2 | 84.9 |
r3-1-2 | 81.2 | 96.7 | 93.2 | 88.9 | 81.3 | 82.9 |
r4-1-2 | 82.8 | 96.7 | 93.3 | 89.2 | 81.7 | 83.2 |
r4-2-2 | 71.5 | 96.5 | 92.6 | 86.4 | 76.6 | 80.4 |
NA10080 | ||||||
r2-1-4 | 60.7 | 96.4 | 92.1 | 84.5 | 73.2 | 78.4 |