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Table 5 Summary of WES coverage statistics

From: Analytical validation of whole exome and whole genome sequencing for clinical applications

Replicate Mean % Bases > =1X % Bases > =10X % Bases > =20X % Bases > =30X % Coding bases callable
NA12878
r1-1-1 57.4 96.8 93.6 89.2 79.3 83.8
r1-1-2 57.4 96.8 93.6 89.1 79.3 83.8
r2-1-1 66.8 96.2 92.0 85.4 75.2 79.7
r3-1-1 81.8 96.7 93.6 90.7 85.1 84.8
r3-2-1 74.5 96.7 93.6 90.8 85.0 85.1
r4-1-1 83.7 96.7 93.7 90.9 85.5 85.0
r4-2-1 73.6 96.6 93.2 89.1 81.5 83.1
NA12891
r3-1-3 70.9 96.5 92.4 86.0 75.8 80.1
r4-1-3 70.8 96.6 92.5 85.9 75.7 80.2
r4-2-3 60.9 96.3 91.4 82.2 69.8 76.5
NA12892
r3-1-4 70.7 96.5 92.7 87.5 78.7 82.5
r4-1-4 71.4 96.6 92.8 87.7 79 82.7
r4-2-4 61.7 96.4 91.9 84.5 73.2 79.7
NA18507
r2-1-2 66.4 96.4 92.1 84.7 73.8 78.7
r2-1-3 92.2 96.7 93.6 90.9 86.2 84.9
r3-1-2 81.2 96.7 93.2 88.9 81.3 82.9
r4-1-2 82.8 96.7 93.3 89.2 81.7 83.2
r4-2-2 71.5 96.5 92.6 86.4 76.6 80.4
NA10080
r2-1-4 60.7 96.4 92.1 84.5 73.2 78.4
  1. Percent RefSeq Coding Bases Callable reports the percentage of all RefSeq coding exons bases (as downloaded from the UCSC Genome Browser) considered callable. The baseline value for the capture targets is 95.5%.