Table 6 Summary of WGS coverage statistics
From: Analytical validation of whole exome and whole genome sequencing for clinical applications
Replicate | Mean | % Bases > =1X | % Bases > =10X | % Bases > =20X | % Bases > =30X | % Coding bases callable |
|---|---|---|---|---|---|---|
NA12878 | ||||||
r1-1-1 | 51.0 | 95.4 | 94.9 | 94.3 | 93.1 | 91.8 |
r1-1-3 | 49.8 | 95.4 | 94.9 | 94.3 | 93.1 | 91.9 |
r2-1-1 | 36.5 | 95.4 | 94.7 | 93.5 | 86.9 | 91.6 |
r2-2-1 | 34.6 | 95.4 | 94.7 | 93.2 | 82.9 | 91.2 |
r3-1-1 | 49.9 | 95.5 | 95.0 | 94.5 | 93.5 | 91.9 |
r3-2-1 | 39.8 | 95.5 | 94.8 | 93.9 | 89.4 | 91.0 |
NA12891 | ||||||
r3-1-2 | 42.7 | 96.8 | 96.1 | 94.3 | 88.7 | 91.2 |
NA12892 | ||||||
r3-1-4 | 45.1 | 95.2 | 90.8 | 86.6 | 81.3 | 90.9 |
NA18507 | ||||||
r2-1-3 | 30.0 | 96.8 | 95.7 | 89.4 | 65.8 | 87.3 |
r2-1-4 | 35.8 | 96.8 | 96.0 | 92.3 | 83.4 | 90.2 |
r3-1-3 | 51.7 | 96.9 | 96.3 | 95.4 | 91.6 | 91.6 |
NA10080 | ||||||
r2-1-2 | 35.1 | 96.9 | 96.1 | 92.0 | 81.7 | 89 |