Table 1 Transcriptome datasets
Description | Dataset I | Dataset II | Dataset III | |
|---|---|---|---|---|
Cell line | Neuronal cell line (CAD) | Breast cancer cell line (MDA-MB231) | Ovarian cancer cell line (A2780) | |
Samples: PTPB1-KD (controls) | 1(1) | 4(8) | 4(8) | |
References | Authors | Yap K at al. | Gardeux V et al. | Gardeux V et al. |
| Â | Source | Genes & Dev. | - | - |
| Â | Date | Downloaded 01-2013 | 2013 | 2013 |
| Â | GEO ID | GSE37933 | GSE52493 | GSE52493 |
Expression measurements | Type | RNA-Seq | Microarray GeneChip | Microarray GeneChip |
| Â | Platform | Genome Analyzer IIx Illumina | Prime View Human Gene Expression Array | Prime View Human Gene Expression Array |
Measured transcripts or probes | 27389 | 49395 | 49395 | |
Deregulated transcripts or genes | 707 | 720 | 469 | |