Skip to main content

Table 1 Transcriptome datasets

From: Concordance of deregulated mechanisms unveiled in underpowered experiments: PTBP1 knockdown case study

Description Dataset I Dataset II Dataset III
Cell line Neuronal cell line (CAD) Breast cancer cell line (MDA-MB231) Ovarian cancer cell line (A2780)
Samples: PTPB1-KD (controls) 1(1) 4(8) 4(8)
References Authors Yap K at al. Gardeux V et al. Gardeux V et al.
  Source Genes & Dev. - -
  Date Downloaded 01-2013 2013 2013
  GEO ID GSE37933 GSE52493 GSE52493
Expression measurements Type RNA-Seq Microarray
GeneChip
Microarray
GeneChip
  Platform Genome Analyzer IIx Illumina Prime View Human Gene Expression Array Prime View Human Gene Expression Array
Measured transcripts or probes 27389 49395 49395
Deregulated transcripts or genes 707 720 469