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Table 3 Definition of two sets of parameters used in the optimal CSH theoretical predictions for identification of CSH probes.

From: In Silicocancer cell versus stroma cellularity index computed from species-specific human and mouse transcriptome of xenograft models: towards accurate stroma targeting therapy assessment

  Conditions Predicted # of CSH probes for vers.1 mouse probes Predicted # of CSH probes for vers.1 human probes
Model 1-1 {18<Alignment<=20 and mismatches<6} UNION
{20<Alignment<=30 and mismatches<7} UNION
{30<Alignment<=40 and mismatches<8} UNION
{40<Alignment<=45 and mismatches<9} UNION
{45<Alignment<=50 and mismatches<10}
UNION {50<Alignment and mismatches<11}
3819 4755
Model 1-2 {30<Alignment<=40 and mismatches<8} UNION
{40<Alignment<=45 and mismatches<9} UNION
{45<Alignment<=50 and mismatches<10}
UNION {50<Alignment and mismatches<11}
3525 4370
  1. Computational optimization results shown in Additional file 1 - Supp. Figure S1.