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Table 3 Definition of two sets of parameters used in the optimal CSH theoretical predictions for identification of CSH probes.

From: In Silicocancer cell versus stroma cellularity index computed from species-specific human and mouse transcriptome of xenograft models: towards accurate stroma targeting therapy assessment

 

Conditions

Predicted # of CSH probes for vers.1 mouse probes

Predicted # of CSH probes for vers.1 human probes

Model 1-1

{18<Alignment<=20 and mismatches<6} UNION

{20<Alignment<=30 and mismatches<7} UNION

{30<Alignment<=40 and mismatches<8} UNION

{40<Alignment<=45 and mismatches<9} UNION

{45<Alignment<=50 and mismatches<10}

UNION {50<Alignment and mismatches<11}

3819

4755

Model 1-2

{30<Alignment<=40 and mismatches<8} UNION

{40<Alignment<=45 and mismatches<9} UNION

{45<Alignment<=50 and mismatches<10}

UNION {50<Alignment and mismatches<11}

3525

4370

  1. Computational optimization results shown in Additional file 1 - Supp. Figure S1.