Table 3 Impact of different average reference lengths on performance.
From: GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda
Average Reference Length | 1 GPU | 2 GPUs | 4 GPUs | miRanda on CPU | 4GPUs vs. CPU | |||
|---|---|---|---|---|---|---|---|---|
| Â | Time | GCUPs | Time | GCUPs | Time | GCUPs | Time | Speedup |
1000 | 1.55 | 0.99 | 1.42 | 1.08 | 1.6 | 0.96 | 54 | 33x |
5000 | 4.83 | 1.59 | 3.17 | 2.43 | 2.57 | 3.01 | 240 | 93x |
10000 | 8.8 | 1.72 | 5.19 | 2.92 | 3.66 | 4.14 | 556 | 151x |
22000 | 19.25 | 1.8 | 10.49 | 3.3 | 6.47 | 5.36 | 1076 | 166x |