Integrating PPI datasets with the PPI data from biomedical literature for protein complex detection

BMC Medical Genomics

Table 4 The Accuracy performances of ClusterONE on PPI datasets using the MIPS gold standard

Threshold	Collins	Gavin	Krogan-core	Krogan-extended	BioGRID	Avg.Δ
Origin	0.4141	0.3727	0.3588	0.3661	0.4286
0	0.4166	0.3738	0.3685	0.3807	0.4317
-0.1	0.4168	0.3738	0.3705	0.3799	0.4301
-0.2	0.4186	0.3812	0.3717	0.3818	0.4258
-0.3	0.4168	0.3803	0.3732	0.3827	0.4302
-0.4	0.419	0.3778	0.3754	0.383	0.4319
-0.5	0.4209	0.3759	0.376	0.3822	0.4386
-0.6	0.4188	0.3813	0.374	0.3813	0.4409
-0.7	0.4222	0.3821	0.3746	0.3839	0.4415
-0.8	0.4205	0.3847	0.3781	0.3818	0.4468
-0.9	0.4193	0.3814	0.3779	0.3868	0.4393
Δ(-0.6)	1.13%	2.3%	4.24%	4.15%	2.87%	2.938%

Δ(-0.6) denotes the MMR improvement with the threshold -0.6 over that on the original datasets. Avg.Δ denotes the average MMR improvement over that on the original datasets.

ISSN: 1755-8794